hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00250011/chunk_1/iprscan-20080502-00250011.nocrc
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Query sequence: KIAA1351
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                  56.5    3.5e-12   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/6      69   118 ..     1    46 []    22.4    0.063
SM00320    2/6     121   164 ..     1    46 []     0.5    4e+02
SM00320    3/6     572   615 ..     1    46 []     2.0  2.3e+02
SM00320    4/6     716   755 ..     1    46 []    14.1      2.9
SM00320    5/6     757   797 ..     1    46 []     9.1       18
SM00320    6/6     800   841 ..     1    46 []     8.3       24

Alignments of top-scoring domains:
SM00320: domain 1 of 6, from 69 to 118: score 22.4, E = 0.063
                   *->t.kllrtlkgHtgespVtsvafspdggss....dspnllasgs.Dgt
                      t + l++l+ H++  +V  v++   + + + ++++  +las++ +g+
    KIAA1351    69    TaQTLQVLEKHKA--DVVKVKWARENYHHnigsPYCLRLASADvNGK 113  

                   irlWd<-*
                   i +Wd   
    KIAA1351   114 IIVWD    118  

SM00320: domain 2 of 6, from 121 to 164: score 0.5, E = 4e+02
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +   ++++ H +  p+ +v++  + ++  s +ll++  + + i lW
    KIAA1351   121    AgVAQCEIQEHAK--PIQDVQWLWNQDA--SRDLLLAIHpPNYIVLW 163  

                   d<-*
                   +   
    KIAA1351   164 N    164  

SM00320: domain 3 of 6, from 572 to 615: score 2.0, E = 2.3e+02
                   *->t.kllrtlkgHtge..spVtsvafspdggssdspnllasgs.Dgtir
                      ++     ++g +g+++s++  +++s+        ++la+  +D+ + 
    KIAA1351   572    PtGRSIAFRGERGNdeSAIEMIKVSHLK------QYLAVVFrDKPLE 612  

                   lWd<-*
                   lWd   
    KIAA1351   613 LWD    615  

SM00320: domain 4 of 6, from 716 to 755: score 14.1, E = 2.9
                   *->t.kllrtlk..gHtgespVtsvafspdggssdspnllasgs.Dgtir
                      + k  + ++++g  g  ++t++a+  d         l+ g+ Dg++ 
    KIAA1351   716    SvKDSARIPpdGSMG--SITCIAWKGD--------TLVLGDmDGNLN 752  

                   lWd<-*
                   +Wd   
    KIAA1351   753 FWD    755  

SM00320: domain 5 of 6, from 757 to 797: score 9.1, E = 18
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++++ r ++ H++  +V+ ++f p      +++ l++  +Dg   +W
    KIAA1351   757    KgRVSRGIPTHRS--WVRKIRFAPGK----GNQKLIAMYnDG-AEVW 796  

                   d<-*
                   d   
    KIAA1351   797 D    797  

SM00320: domain 6 of 6, from 800 to 841: score 8.3, E = 24
                   *->t.kllrtlkgHtge.spVtsvafspdggssdspnllasgs.Dgtirl
                      + + +++l+  ++ + ++++v+++ +       + ++ +s+Dg+ir+
    KIAA1351   800    EvQMVSSLRSGRNVtFRILDVDWCTS-------DKVILASdDGCIRV 839  

                   Wd<-*
                    +   
    KIAA1351   840 LE    841  

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