# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj01021s1.fasta.huge -Q ../query/KIAA1351.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1351, 1243 aa
 vs ./tmplib.24314 library

1986262 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.0329+/-0.00505; mu= 23.1918+/- 0.346
 mean_var=93.7458+/-22.611, 0's: 0 Z-trim: 5  B-trim: 0 in 0/40
 Lambda= 0.132464

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0449  ( 1628 res)   ff06247                    (1628)  147 39.7  0.0045


>>KIAA0449  ( 1628 res)   ff06247                         (1628 aa)
 initn: 110 init1:  79 opt: 147  Z-score: 147.1  bits: 39.7 E(): 0.0045
Smith-Waterman score: 156;  21.379% identity (52.759% similar) in 290 aa overlap (567-836:1322-1598)

        540       550       560       570       580       590      
KIAA13 VKGIEWTSLTSFLSFATSTPNNMGLVRNELQLVDLPTGRSIAFRGERGNDESAIEMIKVS
                                     .. .: ::. ::  . .:. .... .   :
KIAA04 VSMAEGHTKPILCLDATDELLFTGSKDRSCKMWNLVTGQEIA--ALKGHPNNVVSIKYCS
            1300      1310      1320      1330        1340         

        600       610        620       630         640             
KIAA13 HLKQYLAVVFRDKPLELWDVR-TCTLLREMSKNFPTIT--ALEWSPSHNLKSLRKK----
       :    ..:    . ...::.: .   .: ....  .:.  :   . .. . : . .    
KIAA04 HSGLVFSV--STSYIKVWDIRDSAKCIRTLTSSGQVISGDACAATSTRAITSAQGEHQIN
    1350        1360      1370      1380      1390      1400       

     650       660       670           680       690        700    
KIAA13 QLATREAMARQTVVSDTELSIVESS----VISLLQEAESKSELSQNISAREH-FVFTDID
       :.:   . .   ..: . . : : :    : .:  .      :. . .: .: .: :   
KIAA04 QIALSPSGTMLYAASGNAVRIWELSRFQPVGKLTGHIGPVMCLTVTQTASQHDLVVTGSK
      1410      1420      1430      1440      1450      1460       

          710       720            730       740       750         
KIAA13 GQVYHLTVEGNSVKDSARI-----PPDGSMGSITCIAWKGDTLVLGDMDGNLNFWDL-KG
        .  ..   :. :  .        ::   . .: :.: .:: :  :. :.... ::: . 
KIAA04 DHYVKMFELGECVTGTIGPTHNFEPP--HYDGIECLAIQGDILFSGSRDNGIKKWDLDQQ
      1470      1480      1490        1500      1510      1520     

      760        770       780       790        800       810      
KIAA13 RVSRGIPT-HRSWVRKIRFAPGKGNQKLIAMYNDGA-EVWDTKEVQMVSSLRSGRNVTFR
       .. . ::. :..::  . : ::.    :..    :. .::.. .   .. .. :..  . 
KIAA04 ELIQQIPNAHKDWVCALAFIPGR--PMLLSACRAGVIKVWNVDNFTPIGEIK-GHDSPIN
        1530      1540        1550      1560      1570       1580  

        820       830       840       850       860       870      
KIAA13 ILDVDWCTSDKVILASDDGCIRVLEMSMKSACFRMDEQELTEPVWCPYLLVPRASLALKA
        .    ::. : :..... :                                        
KIAA04 AI----CTNAKHIFTASSDCRVKLWNYVPGLTPCLPRRVLAIKGRATTLP          
               1590      1600      1610      1620                  




1243 residues in 1 query   sequences
1986262 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:18:51 2008 done: Thu Dec 18 15:18:52 2008
 Total Scan time:  0.750 Total Display time:  0.050

Function used was FASTA [version 34.26.5 April 26, 2007]