hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00131500/chunk_1/iprscan-20080502-00131500.nocrc
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Query sequence: KIAA1344
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00085.10.ls Thioredoxin                                   6.4    4.7e-05   1
PF00085.10.fs Thioredoxin                                  18.5    0.00013   2

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00085.10.ls   1/1     425   528 ..     1   111 []     6.4  4.7e-05

Alignments of top-scoring domains:
PF00085.10.ls: domain 1 of 1, from 425 to 528: score 6.4, E = 4.7e-05
                   *->vvlvltdenFdeevaksdekkpVLVdFYApWCGpCKmlAPe....ye
                       +++lt e+F++ v +     + +V FYA W    ++      ++y 
    KIAA1344   425    LTVELTEETFNATVMA----SDSIVLFYAGW----QAVSMAflqsYI 463  

                   klAqeykdetsdvkfaKVDaDenpdlaskygVrgfPTlkffknGkkvepi
                     A ++k+++    +  +++ +++d++ k +V+ fP +k++k+G+ +   
    KIAA1344   464 DVAVKLKGTS-TMLLTRINCADWSDVCTKQNVTEFPIIKMYKKGENPV-- 510  

                   dyvGaRtkddLvafikkh<-*
                   +y G +   dL +fi+ +   
    KIAA1344   511 SYAGMLGTKDLLKFIQLN    528  

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