hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00113912/chunk_1/iprscan-20080502-00113912.nocrc
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Query sequence: KIAA1343
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00717                                                  92.6    4.7e-23   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00717    1/2     110   158 ..     1    53 []    42.0  7.9e-08
SM00717    2/2     311   359 ..     1    53 []    50.6  2.1e-10

Alignments of top-scoring domains:
SM00717: domain 1 of 2, from 110 to 158: score 42.0, E = 7.9e-08
                   *->kkgeWteeEdelLleavkkyGkgtdndWakIakelpgRtpkqcrerw
                        +eWt e+  l+++a   +G    + +++I ++lp +t  ++++++
    KIAA1343   110    FPDEWTVEDKVLFEQAFSFHG----KSFHRIQQMLPDKTIASLVKYY 152  

                   rnllkp<-*
                   + ++k+   
    KIAA1343   153 YSWKKT    158  

SM00717: domain 2 of 2, from 311 to 359: score 50.6, E = 2.1e-10
                   *->kkgeWteeEdelLleavkkyGkgtdndWakIakelpgRtpkqcrerw
                         +Wt eE+ l +++v+kyG    +d+++Ia+ ++++t+ q+++++
    KIAA1343   311    INARWTTEEQLLAVQGVRKYG----KDFQAIADVIGNKTVGQVKNFF 353  

                   rnllkp<-*
                    n+ ++   
    KIAA1343   354 VNYRRR    359  

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