# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/fj00420.fasta.nr -Q ../query/KIAA1343.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1343, 520 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7808841 sequences Expectation_n fit: rho(ln(x))= 6.6564+/-0.000208; mu= 5.8543+/- 0.012 mean_var=147.1735+/-28.450, 0's: 39 Z-trim: 81 B-trim: 337 in 1/67 Lambda= 0.105721 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|148681022|gb|EDL12969.1| REST corepressor 3, is ( 555) 3399 530.1 6.1e-148 gi|114572468|ref|XP_514175.2| PREDICTED: REST core ( 549) 3383 527.6 3.3e-147 gi|194380264|dbj|BAG63899.1| unnamed protein produ ( 553) 3383 527.6 3.3e-147 gi|90103520|sp|Q9P2K3.2|RCOR3_HUMAN RecName: Full= ( 495) 3362 524.4 2.8e-146 gi|109018384|ref|XP_001109084.1| PREDICTED: simila ( 495) 3357 523.6 4.7e-146 gi|149708576|ref|XP_001489961.1| PREDICTED: REST c ( 497) 3356 523.5 5.3e-146 gi|76638157|ref|XP_611771.2| PREDICTED: similar to ( 495) 3323 518.4 1.7e-144 gi|197246106|gb|AAI69033.1| Unknown (protein for M ( 551) 3323 518.5 1.9e-144 gi|114572470|ref|XP_001169683.1| PREDICTED: REST c ( 549) 3311 516.7 6.6e-144 gi|119613829|gb|EAW93423.1| REST corepressor 3 [Ho ( 467) 3168 494.8 2.2e-137 gi|149041058|gb|EDL95015.1| rCG20198 [Rattus norve ( 467) 3108 485.6 1.2e-134 gi|94732879|emb|CAK04914.1| novel protein similar ( 547) 2631 412.9 1.1e-112 gi|114572472|ref|XP_001169808.1| PREDICTED: REST c ( 445) 2578 404.8 2.6e-110 gi|193785977|dbj|BAG54764.1| unnamed protein produ ( 449) 2578 404.8 2.6e-110 gi|55665699|emb|CAH72432.1| REST corepressor 3 [Ho ( 436) 2068 327.0 6.6e-87 gi|21595082|gb|AAH31608.1| RCOR3 protein [Homo sap ( 436) 2065 326.5 9.1e-87 gi|82233758|sp|Q5ZJ40.1|RCOR3_CHICK RecName: Full= ( 378) 2006 317.5 4.2e-84 gi|73960840|ref|XP_537141.2| PREDICTED: similar to ( 476) 1984 314.2 5e-83 gi|148681021|gb|EDL12968.1| REST corepressor 3, is ( 399) 1926 305.3 2.1e-80 gi|90103521|sp|Q6PGA0.2|RCOR3_MOUSE RecName: Full= ( 451) 1921 304.6 3.8e-80 gi|149641517|ref|XP_001509399.1| PREDICTED: simila ( 704) 1918 304.3 7.1e-80 gi|127799296|gb|AAH57141.2| REST corepressor 3 [Mu ( 395) 1900 301.3 3.2e-79 gi|73983294|ref|XP_867262.1| PREDICTED: similar to ( 532) 1893 300.4 8.2e-79 gi|82237424|sp|Q6P116.1|RCOR2_DANRE RecName: Full= ( 536) 1844 292.9 1.5e-76 gi|210123384|gb|EEA71085.1| hypothetical protein B ( 490) 1797 285.7 2e-74 gi|73983296|ref|XP_867275.1| PREDICTED: similar to ( 525) 1686 268.8 2.6e-69 gi|147744586|sp|Q8IZ40.2|RCOR2_HUMAN RecName: Full ( 523) 1677 267.4 6.7e-69 gi|23958561|gb|AAH23587.1| REST corepressor 2 [Hom ( 523) 1677 267.4 6.7e-69 gi|73983292|ref|XP_540889.2| PREDICTED: similar to ( 523) 1674 267.0 9.2e-69 gi|148701350|gb|EDL33297.1| REST corepressor 2 [Mu ( 491) 1672 266.6 1.1e-68 gi|81914092|sp|Q8C796.1|RCOR2_MOUSE RecName: Full= ( 523) 1672 266.7 1.1e-68 gi|76657519|ref|XP_615207.2| PREDICTED: similar to ( 523) 1671 266.5 1.3e-68 gi|8346962|emb|CAB93943.1| CoREST protein [Mus mus ( 479) 1669 266.2 1.5e-68 gi|81909674|sp|Q5FWT8.1|RCOR2_RAT RecName: Full=RE ( 523) 1669 266.2 1.6e-68 gi|194374913|dbj|BAG62571.1| unnamed protein produ ( 374) 1641 261.8 2.4e-67 gi|114638234|ref|XP_001162519.1| PREDICTED: REST c ( 517) 1615 258.0 4.7e-66 gi|194218370|ref|XP_001488709.2| PREDICTED: simila ( 523) 1614 257.8 5.2e-66 gi|82237146|sp|Q6NRZ0.1|RCOR2_XENLA RecName: Full= ( 503) 1565 250.3 9.1e-64 gi|119594587|gb|EAW74181.1| REST corepressor 2, is ( 423) 1544 247.0 7.4e-63 gi|109105867|ref|XP_001118333.1| PREDICTED: simila ( 406) 1524 244.0 6e-62 gi|149408631|ref|XP_001507641.1| PREDICTED: simila ( 450) 1440 231.2 4.6e-58 gi|47213388|emb|CAF93341.1| unnamed protein produc ( 498) 1356 218.4 3.6e-54 gi|66564701|ref|XP_392644.2| PREDICTED: similar to ( 419) 1331 214.6 4.4e-53 gi|134023925|gb|AAI35878.1| Rcor2 protein [Xenopus ( 446) 1319 212.7 1.6e-52 gi|112419377|gb|AAI22024.1| Rcor3 protein [Xenopus ( 456) 1162 188.8 2.7e-45 gi|14714904|gb|AAH10608.1| RCOR2 protein [Homo sap ( 305) 1059 172.9 1.1e-40 gi|190649429|gb|EDV46707.1| GG19230 [Drosophila er ( 674) 998 164.0 1.2e-37 gi|194188546|gb|EDX02130.1| GE15848 [Drosophila ya ( 676) 975 160.5 1.4e-36 gi|194204816|gb|EDX18392.1| GD17446 [Drosophila si ( 668) 970 159.7 2.3e-36 gi|194134644|gb|EDW56160.1| GM22965 [Drosophila se ( 664) 962 158.5 5.4e-36 >>gi|148681022|gb|EDL12969.1| REST corepressor 3, isofor (555 aa) initn: 3399 init1: 3399 opt: 3399 Z-score: 2812.3 bits: 530.1 E(): 6.1e-148 Smith-Waterman score: 3399; 95.577% identity (98.462% similar) in 520 aa overlap (1-520:36-555) 10 20 30 KIAA13 VSLPFSFFSFLFFIYIFWHCFADVGMRVGA ..::.: .: : .: ::::::::::::: gi|148 SRCRRSPRPAPPRPHPATASPALPRLESLCLALPLSSPYLLPFYHISWHCFADVGMRVGA 10 20 30 40 50 60 40 50 60 70 80 90 KIAA13 EYQARIPEFDPGATKYTDKDNGGMLVWSPYHSIPDAKLDEYIAIAKEKHGYNVEQALGML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 EYQARIPEFDPGATKYTDKDNGGMLVWSPYHSIPDAKLDEYIAIAKEKHGYNVEQALGML 70 80 90 100 110 120 100 110 120 130 140 150 KIAA13 FWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 FWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVK 130 140 150 160 170 180 160 170 180 190 200 210 KIAA13 YYYSWKKTRSRTSLMDRQARKLANRHNQGDSDDDVEETHPMDGNDSDYDPKKEAKKEGNT :::::::::::::::::::::::::::::::::::::.:::::::::::::::::.:::. gi|148 YYYSWKKTRSRTSLMDRQARKLANRHNQGDSDDDVEEAHPMDGNDSDYDPKKEAKREGNA 190 200 210 220 230 240 220 230 240 250 260 270 KIAA13 EQPVQTSKIGLGRREYQSLQHRHHSQRSKCRPPKGMYLTQEDVVAVSCSPNAANTILRQL .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 DQPVQTSKIGLGRREYQSLQHRHHSQRSKCRPPKGMYLTQEDVVAVSCSPNAANTILRQL 250 260 270 280 290 300 280 290 300 310 320 330 KIAA13 DMELISLKRQVQNAKQVNSALKQKMEGGIEEFKPPESNQKINARWTTEEQLLAVQGVRKY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 DMELISLKRQVQNAKQVNSALKQKMEGGIEEFKPPESNQKINARWTTEEQLLAVQGVRKY 310 320 330 340 350 360 340 350 360 370 380 390 KIAA13 GKDFQAIADVIGNKTVGQVKNFFVNYRRRFNLEEVLQEWEAEQGTQASNGDASTLGEETK :::::::::::::::::::::::::::::::::::::::::::::::::.:::.:::::. gi|148 GKDFQAIADVIGNKTVGQVKNFFVNYRRRFNLEEVLQEWEAEQGTQASNADASALGEETQ 370 380 390 400 410 420 400 410 420 430 440 450 KIAA13 SASNVPSGKSTDEEEEAQTPQAPRTLGPSPPAPSSTPTPTAPIATLNQPPPLLRPTLPAA :::.:::::::::: :::::::::::::::::::::::::.::::::::::::::::::: gi|148 SASKVPSGKSTDEEAEAQTPQAPRTLGPSPPAPSSTPTPTVPIATLNQPPPLLRPTLPAA 430 440 450 460 470 480 460 470 480 490 500 510 KIAA13 PALHRQPPPLQQQARFIQPRPTLNQPPPPLIRPANSMPPRLNPRPVLSTVGGQQPPSLIG :::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::: gi|148 PALHRQPPPLQQQARFIQPRPTLNQPPPPLIRPANSMPPRLNPRPVLTTVGGQQPPSLIG 490 500 510 520 530 540 520 KIAA13 IQTDSQSSLH :::::: ::: gi|148 IQTDSQPSLH 550 >>gi|114572468|ref|XP_514175.2| PREDICTED: REST corepres (549 aa) initn: 3383 init1: 3383 opt: 3383 Z-score: 2799.2 bits: 527.6 E(): 3.3e-147 Smith-Waterman score: 3383; 100.000% identity (100.000% similar) in 498 aa overlap (23-520:52-549) 10 20 30 40 50 KIAA13 VSLPFSFFSFLFFIYIFWHCFADVGMRVGAEYQARIPEFDPGATKYTDKDNG :::::::::::::::::::::::::::::: gi|114 AGGGGSGASSTNGGLHYSEPESGCSSDDEHDVGMRVGAEYQARIPEFDPGATKYTDKDNG 30 40 50 60 70 80 60 70 80 90 100 110 KIAA13 GMLVWSPYHSIPDAKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 GMLVWSPYHSIPDAKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPD 90 100 110 120 130 140 120 130 140 150 160 170 KIAA13 EWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 EWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKL 150 160 170 180 190 200 180 190 200 210 220 230 KIAA13 ANRHNQGDSDDDVEETHPMDGNDSDYDPKKEAKKEGNTEQPVQTSKIGLGRREYQSLQHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ANRHNQGDSDDDVEETHPMDGNDSDYDPKKEAKKEGNTEQPVQTSKIGLGRREYQSLQHR 210 220 230 240 250 260 240 250 260 270 280 290 KIAA13 HHSQRSKCRPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 HHSQRSKCRPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALK 270 280 290 300 310 320 300 310 320 330 340 350 KIAA13 QKMEGGIEEFKPPESNQKINARWTTEEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 QKMEGGIEEFKPPESNQKINARWTTEEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNF 330 340 350 360 370 380 360 370 380 390 400 410 KIAA13 FVNYRRRFNLEEVLQEWEAEQGTQASNGDASTLGEETKSASNVPSGKSTDEEEEAQTPQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 FVNYRRRFNLEEVLQEWEAEQGTQASNGDASTLGEETKSASNVPSGKSTDEEEEAQTPQA 390 400 410 420 430 440 420 430 440 450 460 470 KIAA13 PRTLGPSPPAPSSTPTPTAPIATLNQPPPLLRPTLPAAPALHRQPPPLQQQARFIQPRPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 PRTLGPSPPAPSSTPTPTAPIATLNQPPPLLRPTLPAAPALHRQPPPLQQQARFIQPRPT 450 460 470 480 490 500 480 490 500 510 520 KIAA13 LNQPPPPLIRPANSMPPRLNPRPVLSTVGGQQPPSLIGIQTDSQSSLH :::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LNQPPPPLIRPANSMPPRLNPRPVLSTVGGQQPPSLIGIQTDSQSSLH 510 520 530 540 >>gi|194380264|dbj|BAG63899.1| unnamed protein product [ (553 aa) initn: 3383 init1: 3383 opt: 3383 Z-score: 2799.1 bits: 527.6 E(): 3.3e-147 Smith-Waterman score: 3383; 100.000% identity (100.000% similar) in 498 aa overlap (23-520:56-553) 10 20 30 40 50 KIAA13 VSLPFSFFSFLFFIYIFWHCFADVGMRVGAEYQARIPEFDPGATKYTDKDNG :::::::::::::::::::::::::::::: gi|194 AGGGGSGASSTNGGLHYSEPESGCSSDDEHDVGMRVGAEYQARIPEFDPGATKYTDKDNG 30 40 50 60 70 80 60 70 80 90 100 110 KIAA13 GMLVWSPYHSIPDAKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 GMLVWSPYHSIPDAKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPD 90 100 110 120 130 140 120 130 140 150 160 170 KIAA13 EWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 EWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKL 150 160 170 180 190 200 180 190 200 210 220 230 KIAA13 ANRHNQGDSDDDVEETHPMDGNDSDYDPKKEAKKEGNTEQPVQTSKIGLGRREYQSLQHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 ANRHNQGDSDDDVEETHPMDGNDSDYDPKKEAKKEGNTEQPVQTSKIGLGRREYQSLQHR 210 220 230 240 250 260 240 250 260 270 280 290 KIAA13 HHSQRSKCRPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 HHSQRSKCRPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALK 270 280 290 300 310 320 300 310 320 330 340 350 KIAA13 QKMEGGIEEFKPPESNQKINARWTTEEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 QKMEGGIEEFKPPESNQKINARWTTEEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNF 330 340 350 360 370 380 360 370 380 390 400 410 KIAA13 FVNYRRRFNLEEVLQEWEAEQGTQASNGDASTLGEETKSASNVPSGKSTDEEEEAQTPQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 FVNYRRRFNLEEVLQEWEAEQGTQASNGDASTLGEETKSASNVPSGKSTDEEEEAQTPQA 390 400 410 420 430 440 420 430 440 450 460 470 KIAA13 PRTLGPSPPAPSSTPTPTAPIATLNQPPPLLRPTLPAAPALHRQPPPLQQQARFIQPRPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 PRTLGPSPPAPSSTPTPTAPIATLNQPPPLLRPTLPAAPALHRQPPPLQQQARFIQPRPT 450 460 470 480 490 500 480 490 500 510 520 KIAA13 LNQPPPPLIRPANSMPPRLNPRPVLSTVGGQQPPSLIGIQTDSQSSLH :::::::::::::::::::::::::::::::::::::::::::::::: gi|194 LNQPPPPLIRPANSMPPRLNPRPVLSTVGGQQPPSLIGIQTDSQSSLH 510 520 530 540 550 >>gi|90103520|sp|Q9P2K3.2|RCOR3_HUMAN RecName: Full=REST (495 aa) initn: 3362 init1: 3362 opt: 3362 Z-score: 2782.4 bits: 524.4 E(): 2.8e-146 Smith-Waterman score: 3362; 100.000% identity (100.000% similar) in 495 aa overlap (26-520:1-495) 10 20 30 40 50 60 KIAA13 VSLPFSFFSFLFFIYIFWHCFADVGMRVGAEYQARIPEFDPGATKYTDKDNGGMLVWSPY ::::::::::::::::::::::::::::::::::: gi|901 MRVGAEYQARIPEFDPGATKYTDKDNGGMLVWSPY 10 20 30 70 80 90 100 110 120 KIAA13 HSIPDAKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|901 HSIPDAKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKV 40 50 60 70 80 90 130 140 150 160 170 180 KIAA13 LFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLANRHNQGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|901 LFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLANRHNQGD 100 110 120 130 140 150 190 200 210 220 230 240 KIAA13 SDDDVEETHPMDGNDSDYDPKKEAKKEGNTEQPVQTSKIGLGRREYQSLQHRHHSQRSKC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|901 SDDDVEETHPMDGNDSDYDPKKEAKKEGNTEQPVQTSKIGLGRREYQSLQHRHHSQRSKC 160 170 180 190 200 210 250 260 270 280 290 300 KIAA13 RPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALKQKMEGGIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|901 RPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALKQKMEGGIE 220 230 240 250 260 270 310 320 330 340 350 360 KIAA13 EFKPPESNQKINARWTTEEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNFFVNYRRRF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|901 EFKPPESNQKINARWTTEEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNFFVNYRRRF 280 290 300 310 320 330 370 380 390 400 410 420 KIAA13 NLEEVLQEWEAEQGTQASNGDASTLGEETKSASNVPSGKSTDEEEEAQTPQAPRTLGPSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|901 NLEEVLQEWEAEQGTQASNGDASTLGEETKSASNVPSGKSTDEEEEAQTPQAPRTLGPSP 340 350 360 370 380 390 430 440 450 460 470 480 KIAA13 PAPSSTPTPTAPIATLNQPPPLLRPTLPAAPALHRQPPPLQQQARFIQPRPTLNQPPPPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|901 PAPSSTPTPTAPIATLNQPPPLLRPTLPAAPALHRQPPPLQQQARFIQPRPTLNQPPPPL 400 410 420 430 440 450 490 500 510 520 KIAA13 IRPANSMPPRLNPRPVLSTVGGQQPPSLIGIQTDSQSSLH :::::::::::::::::::::::::::::::::::::::: gi|901 IRPANSMPPRLNPRPVLSTVGGQQPPSLIGIQTDSQSSLH 460 470 480 490 >>gi|109018384|ref|XP_001109084.1| PREDICTED: similar to (495 aa) initn: 3357 init1: 3357 opt: 3357 Z-score: 2778.3 bits: 523.6 E(): 4.7e-146 Smith-Waterman score: 3357; 99.798% identity (100.000% similar) in 495 aa overlap (26-520:1-495) 10 20 30 40 50 60 KIAA13 VSLPFSFFSFLFFIYIFWHCFADVGMRVGAEYQARIPEFDPGATKYTDKDNGGMLVWSPY ::::::::::::::::::::::::::::::::::: gi|109 MRVGAEYQARIPEFDPGATKYTDKDNGGMLVWSPY 10 20 30 70 80 90 100 110 120 KIAA13 HSIPDAKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 HSIPDAKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKV 40 50 60 70 80 90 130 140 150 160 170 180 KIAA13 LFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLANRHNQGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLANRHNQGD 100 110 120 130 140 150 190 200 210 220 230 240 KIAA13 SDDDVEETHPMDGNDSDYDPKKEAKKEGNTEQPVQTSKIGLGRREYQSLQHRHHSQRSKC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 SDDDVEETHPMDGNDSDYDPKKEAKKEGNTEQPVQTSKIGLGRREYQSLQHRHHSQRSKC 160 170 180 190 200 210 250 260 270 280 290 300 KIAA13 RPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALKQKMEGGIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 RPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALKQKMEGGIE 220 230 240 250 260 270 310 320 330 340 350 360 KIAA13 EFKPPESNQKINARWTTEEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNFFVNYRRRF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 EFKPPESNQKINARWTTEEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNFFVNYRRRF 280 290 300 310 320 330 370 380 390 400 410 420 KIAA13 NLEEVLQEWEAEQGTQASNGDASTLGEETKSASNVPSGKSTDEEEEAQTPQAPRTLGPSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 NLEEVLQEWEAEQGTQASNGDASTLGEETKSASNVPSGKSTDEEEEAQTPQAPRTLGPSP 340 350 360 370 380 390 430 440 450 460 470 480 KIAA13 PAPSSTPTPTAPIATLNQPPPLLRPTLPAAPALHRQPPPLQQQARFIQPRPTLNQPPPPL :.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 PVPSSTPTPTAPIATLNQPPPLLRPTLPAAPALHRQPPPLQQQARFIQPRPTLNQPPPPL 400 410 420 430 440 450 490 500 510 520 KIAA13 IRPANSMPPRLNPRPVLSTVGGQQPPSLIGIQTDSQSSLH :::::::::::::::::::::::::::::::::::::::: gi|109 IRPANSMPPRLNPRPVLSTVGGQQPPSLIGIQTDSQSSLH 460 470 480 490 >>gi|149708576|ref|XP_001489961.1| PREDICTED: REST corep (497 aa) initn: 3356 init1: 3356 opt: 3356 Z-score: 2777.5 bits: 523.5 E(): 5.3e-146 Smith-Waterman score: 3356; 99.798% identity (100.000% similar) in 495 aa overlap (26-520:1-495) 10 20 30 40 50 60 KIAA13 VSLPFSFFSFLFFIYIFWHCFADVGMRVGAEYQARIPEFDPGATKYTDKDNGGMLVWSPY ::::::::::::::::::::::::::::::::::: gi|149 MRVGAEYQARIPEFDPGATKYTDKDNGGMLVWSPY 10 20 30 70 80 90 100 110 120 KIAA13 HSIPDAKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 HSIPDAKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKV 40 50 60 70 80 90 130 140 150 160 170 180 KIAA13 LFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLANRHNQGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLANRHNQGD 100 110 120 130 140 150 190 200 210 220 230 240 KIAA13 SDDDVEETHPMDGNDSDYDPKKEAKKEGNTEQPVQTSKIGLGRREYQSLQHRHHSQRSKC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 SDDDVEETHPMDGNDSDYDPKKEAKKEGNTEQPVQTSKIGLGRREYQSLQHRHHSQRSKC 160 170 180 190 200 210 250 260 270 280 290 300 KIAA13 RPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALKQKMEGGIE :::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::: gi|149 RPPKGMYLTQEDVVAVSCSPNAASTILRQLDMELISLKRQVQNAKQVNSALKQKMEGGIE 220 230 240 250 260 270 310 320 330 340 350 360 KIAA13 EFKPPESNQKINARWTTEEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNFFVNYRRRF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 EFKPPESNQKINARWTTEEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNFFVNYRRRF 280 290 300 310 320 330 370 380 390 400 410 420 KIAA13 NLEEVLQEWEAEQGTQASNGDASTLGEETKSASNVPSGKSTDEEEEAQTPQAPRTLGPSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 NLEEVLQEWEAEQGTQASNGDASTLGEETKSASNVPSGKSTDEEEEAQTPQAPRTLGPSP 340 350 360 370 380 390 430 440 450 460 470 480 KIAA13 PAPSSTPTPTAPIATLNQPPPLLRPTLPAAPALHRQPPPLQQQARFIQPRPTLNQPPPPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 PAPSSTPTPTAPIATLNQPPPLLRPTLPAAPALHRQPPPLQQQARFIQPRPTLNQPPPPL 400 410 420 430 440 450 490 500 510 520 KIAA13 IRPANSMPPRLNPRPVLSTVGGQQPPSLIGIQTDSQSSLH :::::::::::::::::::::::::::::::::::::::: gi|149 IRPANSMPPRLNPRPVLSTVGGQQPPSLIGIQTDSQSSLHLN 460 470 480 490 >>gi|76638157|ref|XP_611771.2| PREDICTED: similar to RES (495 aa) initn: 3323 init1: 3323 opt: 3323 Z-score: 2750.3 bits: 518.4 E(): 1.7e-144 Smith-Waterman score: 3323; 98.586% identity (99.798% similar) in 495 aa overlap (26-520:1-495) 10 20 30 40 50 60 KIAA13 VSLPFSFFSFLFFIYIFWHCFADVGMRVGAEYQARIPEFDPGATKYTDKDNGGMLVWSPY ::::::::::::::::::::::::::::::::::: gi|766 MRVGAEYQARIPEFDPGATKYTDKDNGGMLVWSPY 10 20 30 70 80 90 100 110 120 KIAA13 HSIPDAKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|766 HSIPDAKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKV 40 50 60 70 80 90 130 140 150 160 170 180 KIAA13 LFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLANRHNQGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|766 LFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLANRHNQGD 100 110 120 130 140 150 190 200 210 220 230 240 KIAA13 SDDDVEETHPMDGNDSDYDPKKEAKKEGNTEQPVQTSKIGLGRREYQSLQHRHHSQRSKC ::::::::::.:::::::::::::::::::.::::::::::::::::::::::::::::: gi|766 SDDDVEETHPVDGNDSDYDPKKEAKKEGNTDQPVQTSKIGLGRREYQSLQHRHHSQRSKC 160 170 180 190 200 210 250 260 270 280 290 300 KIAA13 RPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALKQKMEGGIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|766 RPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALKQKMEGGIE 220 230 240 250 260 270 310 320 330 340 350 360 KIAA13 EFKPPESNQKINARWTTEEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNFFVNYRRRF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|766 EFKPPESNQKINARWTTEEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNFFVNYRRRF 280 290 300 310 320 330 370 380 390 400 410 420 KIAA13 NLEEVLQEWEAEQGTQASNGDASTLGEETKSASNVPSGKSTDEEEEAQTPQAPRTLGPSP :::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::: gi|766 NLEEVLQEWEAEQGTQASNGDASTLGEETKSASNVPSGKSTDEEEEAQTPQASRTLGPSP 340 350 360 370 380 390 430 440 450 460 470 480 KIAA13 PAPSSTPTPTAPIATLNQPPPLLRPTLPAAPALHRQPPPLQQQARFIQPRPTLNQPPPPL :::::::::.::.:.::::::::::::::::::::::::::::::::::::::::::::: gi|766 PAPSSTPTPAAPMAALNQPPPLLRPTLPAAPALHRQPPPLQQQARFIQPRPTLNQPPPPL 400 410 420 430 440 450 490 500 510 520 KIAA13 IRPANSMPPRLNPRPVLSTVGGQQPPSLIGIQTDSQSSLH ::::::::::::::::::.::::::::::::::::::::: gi|766 IRPANSMPPRLNPRPVLSAVGGQQPPSLIGIQTDSQSSLH 460 470 480 490 >>gi|197246106|gb|AAI69033.1| Unknown (protein for MGC:1 (551 aa) initn: 3323 init1: 3323 opt: 3323 Z-score: 2749.7 bits: 518.5 E(): 1.9e-144 Smith-Waterman score: 3323; 97.590% identity (99.398% similar) in 498 aa overlap (23-520:54-551) 10 20 30 40 50 KIAA13 VSLPFSFFSFLFFIYIFWHCFADVGMRVGAEYQARIPEFDPGATKYTDKDNG :::::::::::::::::::::::::::::: gi|197 SPAGGGGSSANGGLHFSEPESGCSSDDEHGDVGMRVGAEYQARIPEFDPGATKYTDKDNG 30 40 50 60 70 80 60 70 80 90 100 110 KIAA13 GMLVWSPYHSIPDAKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPD :::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::: gi|197 GMLVWSPYHSIPDAKLDEYVAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPD 90 100 110 120 130 140 120 130 140 150 160 170 KIAA13 EWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|197 EWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKL 150 160 170 180 190 200 180 190 200 210 220 230 KIAA13 ANRHNQGDSDDDVEETHPMDGNDSDYDPKKEAKKEGNTEQPVQTSKIGLGRREYQSLQHR ::::::::::::::: :::::::::::::::::.:::.:::::::::::::::::::::: gi|197 ANRHNQGDSDDDVEEPHPMDGNDSDYDPKKEAKREGNSEQPVQTSKIGLGRREYQSLQHR 210 220 230 240 250 260 240 250 260 270 280 290 KIAA13 HHSQRSKCRPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|197 HHSQRSKCRPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALK 270 280 290 300 310 320 300 310 320 330 340 350 KIAA13 QKMEGGIEEFKPPESNQKINARWTTEEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|197 QKMEGGIEEFKPPESNQKINARWTTEEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNF 330 340 350 360 370 380 360 370 380 390 400 410 KIAA13 FVNYRRRFNLEEVLQEWEAEQGTQASNGDASTLGEETKSASNVPSGKSTDEEEEAQTPQA :::::::::::::::::::::::::::.:.:.:::::::::::::::::::::::::::. gi|197 FVNYRRRFNLEEVLQEWEAEQGTQASNADTSALGEETKSASNVPSGKSTDEEEEAQTPQV 390 400 410 420 430 440 420 430 440 450 460 470 KIAA13 PRTLGPSPPAPSSTPTPTAPIATLNQPPPLLRPTLPAAPALHRQPPPLQQQARFIQPRPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|197 PRTLGPSPPAPSSTPTPTAPIATLNQPPPLLRPTLPAAPALHRQPPPLQQQARFIQPRPT 450 460 470 480 490 500 480 490 500 510 520 KIAA13 LNQPPPPLIRPANSMPPRLNPRPVLSTVGGQQPPSLIGIQTDSQSSLH ::::::::::::::::::::::::.:::::::::::::::.:: ::: gi|197 PNQPPPPLIRPANSMPPRLNPRPVLTTVGGQQPPSLIGIQTESQPSLH 510 520 530 540 550 >>gi|114572470|ref|XP_001169683.1| PREDICTED: REST corep (549 aa) initn: 1902 init1: 1902 opt: 3311 Z-score: 2739.8 bits: 516.7 E(): 6.6e-144 Smith-Waterman score: 3311; 98.008% identity (98.207% similar) in 502 aa overlap (23-520:52-549) 10 20 30 40 50 KIAA13 VSLPFSFFSFLFFIYIFWHCFADVGMRVGAEYQARIPEFDPGATKYTDKDNG :::::::::::::::::::::::::::::: gi|114 AGGGGSGASSTNGGLHYSEPESGCSSDDEHDVGMRVGAEYQARIPEFDPGATKYTDKDNG 30 40 50 60 70 80 60 70 80 90 100 110 KIAA13 GMLVWSPYHSIPDAKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 GMLVWSPYHSIPDAKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPD 90 100 110 120 130 140 120 130 140 150 160 170 KIAA13 EWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 EWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKL 150 160 170 180 190 200 180 190 200 210 220 230 KIAA13 ANRHNQGDSDDDVEETHPMDGNDSDYDPKKEAKKEGNTEQPVQTSKIGLGRREYQSLQHR :::::::::::::::::::::::::::: :::::::::::::::::::::::::::: gi|114 ANRHNQGDSDDDVEETHPMDGNDSDYDP----KKEGNTEQPVQTSKIGLGRREYQSLQHR 210 220 230 240 250 240 250 260 270 280 290 KIAA13 HHSQRSKCRPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 HHSQRSKCRPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALK 260 270 280 290 300 310 300 310 320 330 340 350 KIAA13 QKMEGGIEEFKPPESNQKINARWTTEEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 QKMEGGIEEFKPPESNQKINARWTTEEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNF 320 330 340 350 360 370 360 370 380 390 400 KIAA13 FVNYRRRFNLEEVLQEWEAEQGTQASNGDASTLGEETKSASNVPSGKSTDEEEE----AQ :::::::::::::::::::::::::::::::::::::::::::::::::::::: . gi|114 FVNYRRRFNLEEVLQEWEAEQGTQASNGDASTLGEETKSASNVPSGKSTDEEEEVCLSSL 380 390 400 410 420 430 410 420 430 440 450 460 KIAA13 TPQAPRTLGPSPPAPSSTPTPTAPIATLNQPPPLLRPTLPAAPALHRQPPPLQQQARFIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 TPQAPRTLGPSPPAPSSTPTPTAPIATLNQPPPLLRPTLPAAPALHRQPPPLQQQARFIQ 440 450 460 470 480 490 470 480 490 500 510 520 KIAA13 PRPTLNQPPPPLIRPANSMPPRLNPRPVLSTVGGQQPPSLIGIQTDSQSSLH :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 PRPTLNQPPPPLIRPANSMPPRLNPRPVLSTVGGQQPPSLIGIQTDSQSSLH 500 510 520 530 540 >>gi|119613829|gb|EAW93423.1| REST corepressor 3 [Homo s (467 aa) initn: 3168 init1: 3168 opt: 3168 Z-score: 2622.8 bits: 494.8 E(): 2.2e-137 Smith-Waterman score: 3168; 100.000% identity (100.000% similar) in 467 aa overlap (54-520:1-467) 30 40 50 60 70 80 KIAA13 VGMRVGAEYQARIPEFDPGATKYTDKDNGGMLVWSPYHSIPDAKLDEYIAIAKEKHGYNV :::::::::::::::::::::::::::::: gi|119 MLVWSPYHSIPDAKLDEYIAIAKEKHGYNV 10 20 30 90 100 110 120 130 140 KIAA13 EQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 EQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDK 40 50 60 70 80 90 150 160 170 180 190 200 KIAA13 TIASLVKYYYSWKKTRSRTSLMDRQARKLANRHNQGDSDDDVEETHPMDGNDSDYDPKKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TIASLVKYYYSWKKTRSRTSLMDRQARKLANRHNQGDSDDDVEETHPMDGNDSDYDPKKE 100 110 120 130 140 150 210 220 230 240 250 260 KIAA13 AKKEGNTEQPVQTSKIGLGRREYQSLQHRHHSQRSKCRPPKGMYLTQEDVVAVSCSPNAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 AKKEGNTEQPVQTSKIGLGRREYQSLQHRHHSQRSKCRPPKGMYLTQEDVVAVSCSPNAA 160 170 180 190 200 210 270 280 290 300 310 320 KIAA13 NTILRQLDMELISLKRQVQNAKQVNSALKQKMEGGIEEFKPPESNQKINARWTTEEQLLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 NTILRQLDMELISLKRQVQNAKQVNSALKQKMEGGIEEFKPPESNQKINARWTTEEQLLA 220 230 240 250 260 270 330 340 350 360 370 380 KIAA13 VQGVRKYGKDFQAIADVIGNKTVGQVKNFFVNYRRRFNLEEVLQEWEAEQGTQASNGDAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VQGVRKYGKDFQAIADVIGNKTVGQVKNFFVNYRRRFNLEEVLQEWEAEQGTQASNGDAS 280 290 300 310 320 330 390 400 410 420 430 440 KIAA13 TLGEETKSASNVPSGKSTDEEEEAQTPQAPRTLGPSPPAPSSTPTPTAPIATLNQPPPLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TLGEETKSASNVPSGKSTDEEEEAQTPQAPRTLGPSPPAPSSTPTPTAPIATLNQPPPLL 340 350 360 370 380 390 450 460 470 480 490 500 KIAA13 RPTLPAAPALHRQPPPLQQQARFIQPRPTLNQPPPPLIRPANSMPPRLNPRPVLSTVGGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RPTLPAAPALHRQPPPLQQQARFIQPRPTLNQPPPPLIRPANSMPPRLNPRPVLSTVGGQ 400 410 420 430 440 450 510 520 KIAA13 QPPSLIGIQTDSQSSLH ::::::::::::::::: gi|119 QPPSLIGIQTDSQSSLH 460 520 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Wed Mar 4 12:02:36 2009 done: Wed Mar 4 12:06:35 2009 Total Scan time: 1472.800 Total Display time: 0.200 Function used was FASTA [version 34.26.5 April 26, 2007]