# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/fh14376.fasta.nr -Q ../query/KIAA1326.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1326, 424 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7822292 sequences Expectation_n fit: rho(ln(x))= 5.8454+/-0.000191; mu= 7.4082+/- 0.011 mean_var=90.7501+/-17.334, 0's: 39 Z-trim: 56 B-trim: 288 in 2/63 Lambda= 0.134633 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|74761344|sp|Q9BZA7.1|PC11X_HUMAN RecName: Full= (1347) 2908 575.2 3.2e-161 gi|15054519|gb|AAK82655.1|AF206516_1 protocadherin (1347) 2908 575.2 3.2e-161 gi|75072431|sp|Q71M42.1|PC11X_PANTR RecName: Full= (1347) 2897 573.0 1.4e-160 gi|75072040|sp|Q6WYY1.1|PC11X_PANPA RecName: Full= (1347) 2891 571.9 3.2e-160 gi|75072044|sp|Q6X862.1|PC11X_GORGO RecName: Full= (1347) 2869 567.6 6.1e-159 gi|75072038|sp|Q6WXV7.1|PC11X_PONPY RecName: Full= (1347) 2850 563.9 7.9e-158 gi|61814231|gb|AAX56122.1| protocadherin 11X isofo (1339) 2829 559.8 1.3e-156 gi|13161066|gb|AAK13471.1|AF332219_1 protocadherin (1337) 2080 414.3 8.3e-113 gi|57208612|emb|CAI41629.1| protocadherin 11 X-lin (1310) 2042 407.0 1.4e-110 gi|15054521|gb|AAK82656.1|AF217288_1 protocadherin (1310) 2042 407.0 1.4e-110 gi|61814237|gb|AAX56124.1| protocadherin 11X isofo (1329) 1970 393.0 2.2e-106 gi|74762719|sp|Q9BZA8.1|PC11Y_HUMAN RecName: Full= (1340) 1969 392.8 2.6e-106 gi|109512232|ref|XP_001055860.1| PREDICTED: simila (1338) 1885 376.5 2.1e-101 gi|194228083|ref|XP_001500396.2| PREDICTED: simila (1306) 1843 368.3 5.9e-99 gi|61814211|gb|AAX56118.1| protocadherin 11 isofor ( 496) 1782 356.2 1e-95 gi|124487051|ref|NP_001074854.1| protocadherin 11 (1334) 1566 314.5 9.4e-83 gi|41223245|emb|CAD92424.1| protocadherin [Homo sa ( 224) 1533 307.5 2e-81 gi|48147006|emb|CAD92447.1| protocadherin [Mus mus (1177) 1505 302.6 3.1e-79 gi|41223282|emb|CAD92440.1| protocadherin [Homo sa ( 222) 1473 295.9 6.3e-78 gi|119623183|gb|EAX02778.1| hCG1797565, isoform CR (1125) 1363 275.0 6.1e-71 gi|41223247|emb|CAD92425.1| protocadherin [Homo sa ( 177) 1213 245.3 8.3e-63 gi|61814197|gb|AAX56116.1| protocadherin 11 isofor ( 304) 1181 239.3 9.5e-61 gi|75071591|sp|Q6KEQ9.1|PC11X_PIG RecName: Full=Pr (1117) 1184 240.3 1.8e-60 gi|118089479|ref|XP_420249.2| PREDICTED: similar t (1199) 1056 215.4 5.7e-53 gi|61814215|gb|AAX56119.1| protocadherin 11 isofor ( 486) 1002 204.6 4e-50 gi|123293571|emb|CAM16851.1| protocadherin 11 X-li (1320) 1002 205.0 8.8e-50 gi|61814239|gb|AAX56125.1| protocadherin 11X isofo (1065) 868 178.9 5.1e-42 gi|119623185|gb|EAX02780.1| hCG1797565, isoform CR (1115) 800 165.7 5e-38 gi|41223249|emb|CAD92426.1| protocadherin [Homo sa ( 107) 718 149.0 4.9e-34 gi|61814205|gb|AAX56117.1| protocadherin 11 isofor ( 294) 721 149.9 7.3e-34 gi|117558501|gb|AAI26931.1| Pcdh11x protein [Mus m (1128) 721 150.3 2.1e-33 gi|41223284|emb|CAD92441.1| protocadherin [Homo sa ( 106) 695 144.5 1.1e-32 gi|41223286|emb|CAD92442.1| protocadherin [Homo sa ( 107) 689 143.4 2.4e-32 gi|118084781|ref|XP_001231264.1| PREDICTED: simila (1237) 692 144.7 1.1e-31 gi|109120908|ref|XP_001087086.1| PREDICTED: simila ( 949) 679 142.1 5.2e-31 gi|21739812|emb|CAD38933.1| hypothetical protein [ (1084) 679 142.2 5.8e-31 gi|73989090|ref|XP_857591.1| PREDICTED: similar to (1206) 679 142.2 6.3e-31 gi|149730274|ref|XP_001494601.1| PREDICTED: protoc (1237) 679 142.2 6.4e-31 gi|206729886|sp|Q9HC56.2|PCDH9_HUMAN RecName: Full (1237) 679 142.2 6.4e-31 gi|114649998|ref|XP_001139491.1| PREDICTED: protoc (1237) 679 142.2 6.4e-31 gi|73989087|ref|XP_848939.1| PREDICTED: similar to (1237) 679 142.2 6.4e-31 gi|62661787|ref|XP_224429.3| PREDICTED: similar to (1237) 677 141.8 8.4e-31 gi|194672054|ref|XP_869314.3| PREDICTED: similar t (1238) 675 141.4 1.1e-30 gi|61814185|gb|AAX56113.1| protocadherin 9 isoform ( 401) 668 139.7 1.2e-30 gi|183396853|gb|AAI65991.1| Protocadherin 9 [synth (1237) 674 141.2 1.3e-30 gi|187957016|gb|AAI58118.1| Protocadherin 9 [Mus m (1237) 673 141.0 1.4e-30 gi|114650005|ref|XP_001139252.1| PREDICTED: protoc (1120) 653 137.1 2e-29 gi|126337564|ref|XP_001362166.1| PREDICTED: simila (1113) 639 134.4 1.3e-28 gi|41223221|emb|CAD92412.1| protocadherin [Homo sa ( 831) 609 128.5 5.8e-27 gi|41223223|emb|CAD92413.1| protocadherin [Homo sa ( 841) 609 128.5 5.9e-27 >>gi|74761344|sp|Q9BZA7.1|PC11X_HUMAN RecName: Full=Prot (1347 aa) initn: 2908 init1: 2908 opt: 2908 Z-score: 3050.6 bits: 575.2 E(): 3.2e-161 Smith-Waterman score: 2908; 100.000% identity (100.000% similar) in 424 aa overlap (1-424:924-1347) 10 20 30 KIAA13 TPTTFKPDSPDLARHYKSASPQPAFQIQPE :::::::::::::::::::::::::::::: gi|747 DDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPE 900 910 920 930 940 950 40 50 60 70 80 90 KIAA13 TPLNSKHHIIQELPLDNTFVACDSISKCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 TPLNSKHHIIQELPLDNTFVACDSISKCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPPM 960 970 980 990 1000 1010 100 110 120 130 140 150 KIAA13 KEVVRSCTPMKESTTMEIWIHPQPQRKSEGKVAGKSQRRVTFHLPEGSQESSSDGGLGDH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 KEVVRSCTPMKESTTMEIWIHPQPQRKSEGKVAGKSQRRVTFHLPEGSQESSSDGGLGDH 1020 1030 1040 1050 1060 1070 160 170 180 190 200 210 KIAA13 DAGSLTSTSHGLPLGYPQEEYFDRATPSNRTEGDGNSDPESTFIPGLKKAAEITVQPTVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 DAGSLTSTSHGLPLGYPQEEYFDRATPSNRTEGDGNSDPESTFIPGLKKAAEITVQPTVE 1080 1090 1100 1110 1120 1130 220 230 240 250 260 270 KIAA13 EASDNCTQECLIYGHSDACWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPRVTQTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 EASDNCTQECLIYGHSDACWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPRVTQTI 1140 1150 1160 1170 1180 1190 280 290 300 310 320 330 KIAA13 ALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPPSAQASALCYSPPLAQAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 ALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPPSAQASALCYSPPLAQAA 1200 1210 1220 1230 1240 1250 340 350 360 370 380 390 KIAA13 AISHSSPLPQVIALHRSQAQSSVSLQQGWVQGADGLCSVDQGVQGSATSQFYTMSERLHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 AISHSSPLPQVIALHRSQAQSSVSLQQGWVQGADGLCSVDQGVQGSATSQFYTMSERLHP 1260 1270 1280 1290 1300 1310 400 410 420 KIAA13 SDDSIKVIPLTTFTPRQQARPSRGDSPIMEEHPL :::::::::::::::::::::::::::::::::: gi|747 SDDSIKVIPLTTFTPRQQARPSRGDSPIMEEHPL 1320 1330 1340 >>gi|15054519|gb|AAK82655.1|AF206516_1 protocadherin-S [ (1347 aa) initn: 2908 init1: 2908 opt: 2908 Z-score: 3050.6 bits: 575.2 E(): 3.2e-161 Smith-Waterman score: 2908; 100.000% identity (100.000% similar) in 424 aa overlap (1-424:924-1347) 10 20 30 KIAA13 TPTTFKPDSPDLARHYKSASPQPAFQIQPE :::::::::::::::::::::::::::::: gi|150 DDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPE 900 910 920 930 940 950 40 50 60 70 80 90 KIAA13 TPLNSKHHIIQELPLDNTFVACDSISKCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|150 TPLNSKHHIIQELPLDNTFVACDSISKCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPPM 960 970 980 990 1000 1010 100 110 120 130 140 150 KIAA13 KEVVRSCTPMKESTTMEIWIHPQPQRKSEGKVAGKSQRRVTFHLPEGSQESSSDGGLGDH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|150 KEVVRSCTPMKESTTMEIWIHPQPQRKSEGKVAGKSQRRVTFHLPEGSQESSSDGGLGDH 1020 1030 1040 1050 1060 1070 160 170 180 190 200 210 KIAA13 DAGSLTSTSHGLPLGYPQEEYFDRATPSNRTEGDGNSDPESTFIPGLKKAAEITVQPTVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|150 DAGSLTSTSHGLPLGYPQEEYFDRATPSNRTEGDGNSDPESTFIPGLKKAAEITVQPTVE 1080 1090 1100 1110 1120 1130 220 230 240 250 260 270 KIAA13 EASDNCTQECLIYGHSDACWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPRVTQTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|150 EASDNCTQECLIYGHSDACWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPRVTQTI 1140 1150 1160 1170 1180 1190 280 290 300 310 320 330 KIAA13 ALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPPSAQASALCYSPPLAQAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|150 ALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPPSAQASALCYSPPLAQAA 1200 1210 1220 1230 1240 1250 340 350 360 370 380 390 KIAA13 AISHSSPLPQVIALHRSQAQSSVSLQQGWVQGADGLCSVDQGVQGSATSQFYTMSERLHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|150 AISHSSPLPQVIALHRSQAQSSVSLQQGWVQGADGLCSVDQGVQGSATSQFYTMSERLHP 1260 1270 1280 1290 1300 1310 400 410 420 KIAA13 SDDSIKVIPLTTFTPRQQARPSRGDSPIMEEHPL :::::::::::::::::::::::::::::::::: gi|150 SDDSIKVIPLTTFTPRQQARPSRGDSPIMEEHPL 1320 1330 1340 >>gi|75072431|sp|Q71M42.1|PC11X_PANTR RecName: Full=Prot (1347 aa) initn: 2897 init1: 2897 opt: 2897 Z-score: 3039.1 bits: 573.0 E(): 1.4e-160 Smith-Waterman score: 2897; 99.528% identity (99.764% similar) in 424 aa overlap (1-424:924-1347) 10 20 30 KIAA13 TPTTFKPDSPDLARHYKSASPQPAFQIQPE :::::::::::::::::::::::::::::: gi|750 DDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPE 900 910 920 930 940 950 40 50 60 70 80 90 KIAA13 TPLNSKHHIIQELPLDNTFVACDSISKCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 TPLNSKHHIIQELPLDNTFVACDSISKCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPPM 960 970 980 990 1000 1010 100 110 120 130 140 150 KIAA13 KEVVRSCTPMKESTTMEIWIHPQPQRKSEGKVAGKSQRRVTFHLPEGSQESSSDGGLGDH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 KEVVRSCTPMKESTTMEIWIHPQPQRKSEGKVAGKSQRRVTFHLPEGSQESSSDGGLGDH 1020 1030 1040 1050 1060 1070 160 170 180 190 200 210 KIAA13 DAGSLTSTSHGLPLGYPQEEYFDRATPSNRTEGDGNSDPESTFIPGLKKAAEITVQPTVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 DAGSLTSTSHGLPLGYPQEEYFDRATPSNRTEGDGNSDPESTFIPGLKKAAEITVQPTVE 1080 1090 1100 1110 1120 1130 220 230 240 250 260 270 KIAA13 EASDNCTQECLIYGHSDACWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPRVTQTI :::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::: gi|750 EASDNCTQECLIYGHSDACWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPPVTQTI 1140 1150 1160 1170 1180 1190 280 290 300 310 320 330 KIAA13 ALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPPSAQASALCYSPPLAQAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 ALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPPSAQASALCYSPPLAQAA 1200 1210 1220 1230 1240 1250 340 350 360 370 380 390 KIAA13 AISHSSPLPQVIALHRSQAQSSVSLQQGWVQGADGLCSVDQGVQGSATSQFYTMSERLHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 AISHSSPLPQVIALHRSQAQSSVSLQQGWVQGADGLCSVDQGVQGSATSQFYTMSERLHP 1260 1270 1280 1290 1300 1310 400 410 420 KIAA13 SDDSIKVIPLTTFTPRQQARPSRGDSPIMEEHPL :::::::::::::::::::::::::::.:::::: gi|750 SDDSIKVIPLTTFTPRQQARPSRGDSPVMEEHPL 1320 1330 1340 >>gi|75072040|sp|Q6WYY1.1|PC11X_PANPA RecName: Full=Prot (1347 aa) initn: 2891 init1: 2891 opt: 2891 Z-score: 3032.8 bits: 571.9 E(): 3.2e-160 Smith-Waterman score: 2891; 99.292% identity (99.764% similar) in 424 aa overlap (1-424:924-1347) 10 20 30 KIAA13 TPTTFKPDSPDLARHYKSASPQPAFQIQPE :::::::::::::::::::::::::::::: gi|750 DDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPE 900 910 920 930 940 950 40 50 60 70 80 90 KIAA13 TPLNSKHHIIQELPLDNTFVACDSISKCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 TPLNSKHHIIQELPLDNTFVACDSISKCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPPM 960 970 980 990 1000 1010 100 110 120 130 140 150 KIAA13 KEVVRSCTPMKESTTMEIWIHPQPQRKSEGKVAGKSQRRVTFHLPEGSQESSSDGGLGDH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 KEVVRSCTPMKESTTMEIWIHPQPQRKSEGKVAGKSQRRVTFHLPEGSQESSSDGGLGDH 1020 1030 1040 1050 1060 1070 160 170 180 190 200 210 KIAA13 DAGSLTSTSHGLPLGYPQEEYFDRATPSNRTEGDGNSDPESTFIPGLKKAAEITVQPTVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 DAGSLTSTSHGLPLGYPQEEYFDRATPSNRTEGDGNSDPESTFIPGLKKAAEITVQPTVE 1080 1090 1100 1110 1120 1130 220 230 240 250 260 270 KIAA13 EASDNCTQECLIYGHSDACWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPRVTQTI :::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::: gi|750 EASDNCTQECLIYGHSDACWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPPVTQTI 1140 1150 1160 1170 1180 1190 280 290 300 310 320 330 KIAA13 ALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPPSAQASALCYSPPLAQAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 ALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPPSAQASALCYSPPLAQAA 1200 1210 1220 1230 1240 1250 340 350 360 370 380 390 KIAA13 AISHSSPLPQVIALHRSQAQSSVSLQQGWVQGADGLCSVDQGVQGSATSQFYTMSERLHP :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|750 AISHSSPLPQVIALHRSQAQSSVSLQQGWVQGADGLCSVDQGVQGSATSQFYTVSERLHP 1260 1270 1280 1290 1300 1310 400 410 420 KIAA13 SDDSIKVIPLTTFTPRQQARPSRGDSPIMEEHPL :::::::::::::::::::::::::::.:::::: gi|750 SDDSIKVIPLTTFTPRQQARPSRGDSPVMEEHPL 1320 1330 1340 >>gi|75072044|sp|Q6X862.1|PC11X_GORGO RecName: Full=Prot (1347 aa) initn: 2869 init1: 2869 opt: 2869 Z-score: 3009.7 bits: 567.6 E(): 6.1e-159 Smith-Waterman score: 2869; 99.057% identity (99.292% similar) in 424 aa overlap (1-424:924-1347) 10 20 30 KIAA13 TPTTFKPDSPDLARHYKSASPQPAFQIQPE :::::::::::::::::::::::::::::: gi|750 DDVDSDGNRVTLDLPIDLEEQTMGKYDWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPE 900 910 920 930 940 950 40 50 60 70 80 90 KIAA13 TPLNSKHHIIQELPLDNTFVACDSISKCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 TPLNSKHHIIQELPLDNTFVACDSISKCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPPM 960 970 980 990 1000 1010 100 110 120 130 140 150 KIAA13 KEVVRSCTPMKESTTMEIWIHPQPQRKSEGKVAGKSQRRVTFHLPEGSQESSSDGGLGDH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 KEVVRSCTPMKESTTMEIWIHPQPQRKSEGKVAGKSQRRVTFHLPEGSQESSSDGGLGDH 1020 1030 1040 1050 1060 1070 160 170 180 190 200 210 KIAA13 DAGSLTSTSHGLPLGYPQEEYFDRATPSNRTEGDGNSDPESTFIPGLKKAAEITVQPTVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 DAGSLTSTSHGLPLGYPQEEYFDRATPSNRTEGDGNSDPESTFIPGLKKAAEITVQPTVE 1080 1090 1100 1110 1120 1130 220 230 240 250 260 270 KIAA13 EASDNCTQECLIYGHSDACWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPRVTQTI :::::::::::::::::::::::::::::: ::::::::::::::::::::::: ::::: gi|750 EASDNCTQECLIYGHSDACWMPASLDHSSSLQAQASALCHSPPLSQASTQHHSPPVTQTI 1140 1150 1160 1170 1180 1190 280 290 300 310 320 330 KIAA13 ALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPPSAQASALCYSPPLAQAA ::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::: gi|750 ALCHSPPVTQTIALCHSPPPIQVSALRHSPPLVQATALHHSPPSAQASALCYSPPLAQAA 1200 1210 1220 1230 1240 1250 340 350 360 370 380 390 KIAA13 AISHSSPLPQVIALHRSQAQSSVSLQQGWVQGADGLCSVDQGVQGSATSQFYTMSERLHP ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 AISHSSPLPQVIALHRSQAQSSVSLQQGWVQGADGLCSVDQGVQGSATSQFYTMSERLHA 1260 1270 1280 1290 1300 1310 400 410 420 KIAA13 SDDSIKVIPLTTFTPRQQARPSRGDSPIMEEHPL :::::::::::::::::::::::::::::::::: gi|750 SDDSIKVIPLTTFTPRQQARPSRGDSPIMEEHPL 1320 1330 1340 >>gi|75072038|sp|Q6WXV7.1|PC11X_PONPY RecName: Full=Prot (1347 aa) initn: 2850 init1: 2850 opt: 2850 Z-score: 2989.7 bits: 563.9 E(): 7.9e-158 Smith-Waterman score: 2850; 98.585% identity (99.292% similar) in 424 aa overlap (1-424:924-1347) 10 20 30 KIAA13 TPTTFKPDSPDLARHYKSASPQPAFQIQPE :::::::::::::::::::::::::::::: gi|750 DDVDSDGNRITLDLPIDLEEQTMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPE 900 910 920 930 940 950 40 50 60 70 80 90 KIAA13 TPLNSKHHIIQELPLDNTFVACDSISKCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPPM ::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::: gi|750 TPLNSKHHIIQELPLDNTFVACDSISKRSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPPM 960 970 980 990 1000 1010 100 110 120 130 140 150 KIAA13 KEVVRSCTPMKESTTMEIWIHPQPQRKSEGKVAGKSQRRVTFHLPEGSQESSSDGGLGDH ::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::.: gi|750 KEVVRSCTPMKESTTMEIWIHPQPQRKSEGKGAGKSQRRVTFHLPEGSQESSSDGGLGEH 1020 1030 1040 1050 1060 1070 160 170 180 190 200 210 KIAA13 DAGSLTSTSHGLPLGYPQEEYFDRATPSNRTEGDGNSDPESTFIPGLKKAAEITVQPTVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 DAGSLTSTSHGLPLGYPQEEYFDRATPSNRTEGDGNSDPESTFIPGLKKAAEITVQPTVE 1080 1090 1100 1110 1120 1130 220 230 240 250 260 270 KIAA13 EASDNCTQECLIYGHSDACWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPRVTQTI :::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::: gi|750 EASDNCTQECLIYGHSDACWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPPVTQTI 1140 1150 1160 1170 1180 1190 280 290 300 310 320 330 KIAA13 ALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPPSAQASALCYSPPLAQAA ::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::: gi|750 ALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALRHSPPSAQASALCYSPPLAQAA 1200 1210 1220 1230 1240 1250 340 350 360 370 380 390 KIAA13 AISHSSPLPQVIALHRSQAQSSVSLQQGWVQGADGLCSVDQGVQGSATSQFYTMSERLHP :::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::: gi|750 AISHSSPLPQVIALHRSQAQSSVSLQQGWVQGAEGLCSVDQGVQGSATSQFYTMSERLHP 1260 1270 1280 1290 1300 1310 400 410 420 KIAA13 SDDSIKVIPLTTFTPRQQARPSRGDSPIMEEHPL :::::::::::::::::::::::::::::::::: gi|750 SDDSIKVIPLTTFTPRQQARPSRGDSPIMEEHPL 1320 1330 1340 >>gi|61814231|gb|AAX56122.1| protocadherin 11X isoform 8 (1339 aa) initn: 2474 init1: 1534 opt: 2829 Z-score: 2967.7 bits: 559.8 E(): 1.3e-156 Smith-Waterman score: 2829; 98.113% identity (98.113% similar) in 424 aa overlap (1-424:924-1339) 10 20 30 KIAA13 TPTTFKPDSPDLARHYKSASPQPAFQIQPE :::::::::::::::::::::::::::::: gi|618 DDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPE 900 910 920 930 940 950 40 50 60 70 80 90 KIAA13 TPLNSKHHIIQELPLDNTFVACDSISKCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|618 TPLNSKHHIIQELPLDNTFVACDSISKCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPPM 960 970 980 990 1000 1010 100 110 120 130 140 150 KIAA13 KEVVRSCTPMKESTTMEIWIHPQPQRKSEGKVAGKSQRRVTFHLPEGSQESSSDGGLGDH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|618 KEVVRSCTPMKESTTMEIWIHPQPQRKSEGKVAGKSQRRVTFHLPEGSQESSSDGGLGDH 1020 1030 1040 1050 1060 1070 160 170 180 190 200 210 KIAA13 DAGSLTSTSHGLPLGYPQEEYFDRATPSNRTEGDGNSDPESTFIPGLKKAAEITVQPTVE :::::::::::::::::::::::::::::::::::::::::: :::::::::: gi|618 DAGSLTSTSHGLPLGYPQEEYFDRATPSNRTEGDGNSDPEST--------AEITVQPTVE 1080 1090 1100 1110 1120 220 230 240 250 260 270 KIAA13 EASDNCTQECLIYGHSDACWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPRVTQTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|618 EASDNCTQECLIYGHSDACWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPRVTQTI 1130 1140 1150 1160 1170 1180 280 290 300 310 320 330 KIAA13 ALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPPSAQASALCYSPPLAQAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|618 ALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPPSAQASALCYSPPLAQAA 1190 1200 1210 1220 1230 1240 340 350 360 370 380 390 KIAA13 AISHSSPLPQVIALHRSQAQSSVSLQQGWVQGADGLCSVDQGVQGSATSQFYTMSERLHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|618 AISHSSPLPQVIALHRSQAQSSVSLQQGWVQGADGLCSVDQGVQGSATSQFYTMSERLHP 1250 1260 1270 1280 1290 1300 400 410 420 KIAA13 SDDSIKVIPLTTFTPRQQARPSRGDSPIMEEHPL :::::::::::::::::::::::::::::::::: gi|618 SDDSIKVIPLTTFTPRQQARPSRGDSPIMEEHPL 1310 1320 1330 >>gi|13161066|gb|AAK13471.1|AF332219_1 protocadherin 11 (1337 aa) initn: 2044 init1: 2044 opt: 2080 Z-score: 2181.5 bits: 414.3 E(): 8.3e-113 Smith-Waterman score: 2816; 97.642% identity (97.642% similar) in 424 aa overlap (1-424:924-1337) 10 20 30 KIAA13 TPTTFKPDSPDLARHYKSASPQPAFQIQPE :::::::::::::::::::::::::::::: gi|131 DDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPE 900 910 920 930 940 950 40 50 60 70 80 90 KIAA13 TPLNSKHHIIQELPLDNTFVACDSISKCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|131 TPLNSKHHIIQELPLDNTFVACDSISKCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPPM 960 970 980 990 1000 1010 100 110 120 130 140 150 KIAA13 KEVVRSCTPMKESTTMEIWIHPQPQRKSEGKVAGKSQRRVTFHLPEGSQESSSDGGLGDH ::::::::::::::::::::::::: ::::::::::::::::::::::::: gi|131 KEVVRSCTPMKESTTMEIWIHPQPQ----------SQRRVTFHLPEGSQESSSDGGLGDH 1020 1030 1040 1050 1060 160 170 180 190 200 210 KIAA13 DAGSLTSTSHGLPLGYPQEEYFDRATPSNRTEGDGNSDPESTFIPGLKKAAEITVQPTVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|131 DAGSLTSTSHGLPLGYPQEEYFDRATPSNRTEGDGNSDPESTFIPGLKKAAEITVQPTVE 1070 1080 1090 1100 1110 1120 220 230 240 250 260 270 KIAA13 EASDNCTQECLIYGHSDACWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPRVTQTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|131 EASDNCTQECLIYGHSDACWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPRVTQTI 1130 1140 1150 1160 1170 1180 280 290 300 310 320 330 KIAA13 ALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPPSAQASALCYSPPLAQAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|131 ALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPPSAQASALCYSPPLAQAA 1190 1200 1210 1220 1230 1240 340 350 360 370 380 390 KIAA13 AISHSSPLPQVIALHRSQAQSSVSLQQGWVQGADGLCSVDQGVQGSATSQFYTMSERLHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|131 AISHSSPLPQVIALHRSQAQSSVSLQQGWVQGADGLCSVDQGVQGSATSQFYTMSERLHP 1250 1260 1270 1280 1290 1300 400 410 420 KIAA13 SDDSIKVIPLTTFTPRQQARPSRGDSPIMEEHPL :::::::::::::::::::::::::::::::::: gi|131 SDDSIKVIPLTTFTPRQQARPSRGDSPIMEEHPL 1310 1320 1330 >>gi|57208612|emb|CAI41629.1| protocadherin 11 X-linked (1310 aa) initn: 2042 init1: 2042 opt: 2042 Z-score: 2141.7 bits: 407.0 E(): 1.4e-110 Smith-Waterman score: 2567; 91.274% identity (91.274% similar) in 424 aa overlap (1-424:924-1310) 10 20 30 KIAA13 TPTTFKPDSPDLARHYKSASPQPAFQIQPE :::::::::::::::::::::::::::::: gi|572 DDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPE 900 910 920 930 940 950 40 50 60 70 80 90 KIAA13 TPLNSKHHIIQELPLDNTFVACDSISKCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|572 TPLNSKHHIIQELPLDNTFVACDSISKCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRP-- 960 970 980 990 1000 1010 100 110 120 130 140 150 KIAA13 KEVVRSCTPMKESTTMEIWIHPQPQRKSEGKVAGKSQRRVTFHLPEGSQESSSDGGLGDH ::::::::::::::::::::::::: gi|572 -----------------------------------SQRRVTFHLPEGSQESSSDGGLGDH 1020 1030 160 170 180 190 200 210 KIAA13 DAGSLTSTSHGLPLGYPQEEYFDRATPSNRTEGDGNSDPESTFIPGLKKAAEITVQPTVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|572 DAGSLTSTSHGLPLGYPQEEYFDRATPSNRTEGDGNSDPESTFIPGLKKAAEITVQPTVE 1040 1050 1060 1070 1080 1090 220 230 240 250 260 270 KIAA13 EASDNCTQECLIYGHSDACWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPRVTQTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|572 EASDNCTQECLIYGHSDACWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPRVTQTI 1100 1110 1120 1130 1140 1150 280 290 300 310 320 330 KIAA13 ALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPPSAQASALCYSPPLAQAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|572 ALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPPSAQASALCYSPPLAQAA 1160 1170 1180 1190 1200 1210 340 350 360 370 380 390 KIAA13 AISHSSPLPQVIALHRSQAQSSVSLQQGWVQGADGLCSVDQGVQGSATSQFYTMSERLHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|572 AISHSSPLPQVIALHRSQAQSSVSLQQGWVQGADGLCSVDQGVQGSATSQFYTMSERLHP 1220 1230 1240 1250 1260 1270 400 410 420 KIAA13 SDDSIKVIPLTTFTPRQQARPSRGDSPIMEEHPL :::::::::::::::::::::::::::::::::: gi|572 SDDSIKVIPLTTFTPRQQARPSRGDSPIMEEHPL 1280 1290 1300 1310 >>gi|15054521|gb|AAK82656.1|AF217288_1 protocadherin-S [ (1310 aa) initn: 2042 init1: 2042 opt: 2042 Z-score: 2141.7 bits: 407.0 E(): 1.4e-110 Smith-Waterman score: 2567; 91.274% identity (91.274% similar) in 424 aa overlap (1-424:924-1310) 10 20 30 KIAA13 TPTTFKPDSPDLARHYKSASPQPAFQIQPE :::::::::::::::::::::::::::::: gi|150 DDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPE 900 910 920 930 940 950 40 50 60 70 80 90 KIAA13 TPLNSKHHIIQELPLDNTFVACDSISKCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|150 TPLNSKHHIIQELPLDNTFVACDSISKCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRP-- 960 970 980 990 1000 1010 100 110 120 130 140 150 KIAA13 KEVVRSCTPMKESTTMEIWIHPQPQRKSEGKVAGKSQRRVTFHLPEGSQESSSDGGLGDH ::::::::::::::::::::::::: gi|150 -----------------------------------SQRRVTFHLPEGSQESSSDGGLGDH 1020 1030 160 170 180 190 200 210 KIAA13 DAGSLTSTSHGLPLGYPQEEYFDRATPSNRTEGDGNSDPESTFIPGLKKAAEITVQPTVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|150 DAGSLTSTSHGLPLGYPQEEYFDRATPSNRTEGDGNSDPESTFIPGLKKAAEITVQPTVE 1040 1050 1060 1070 1080 1090 220 230 240 250 260 270 KIAA13 EASDNCTQECLIYGHSDACWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPRVTQTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|150 EASDNCTQECLIYGHSDACWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPRVTQTI 1100 1110 1120 1130 1140 1150 280 290 300 310 320 330 KIAA13 ALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPPSAQASALCYSPPLAQAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|150 ALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPPSAQASALCYSPPLAQAA 1160 1170 1180 1190 1200 1210 340 350 360 370 380 390 KIAA13 AISHSSPLPQVIALHRSQAQSSVSLQQGWVQGADGLCSVDQGVQGSATSQFYTMSERLHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|150 AISHSSPLPQVIALHRSQAQSSVSLQQGWVQGADGLCSVDQGVQGSATSQFYTMSERLHP 1220 1230 1240 1250 1260 1270 400 410 420 KIAA13 SDDSIKVIPLTTFTPRQQARPSRGDSPIMEEHPL :::::::::::::::::::::::::::::::::: gi|150 SDDSIKVIPLTTFTPRQQARPSRGDSPIMEEHPL 1280 1290 1300 1310 424 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Wed Mar 4 10:51:05 2009 done: Wed Mar 4 10:55:35 2009 Total Scan time: 1480.220 Total Display time: 0.220 Function used was FASTA [version 34.26.5 April 26, 2007]