hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-23413017/chunk_1/iprscan-20080501-23413017.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1325 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08238.2.ls Sel1 repeat 124.6 2.5e-34 5 PF08238.2.fs Sel1 repeat 119.3 7e-34 5 PF07719.7.fs Tetratricopeptide repeat 30.9 1.2e-07 3 PF07719.7.ls Tetratricopeptide repeat 27.4 4.6e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07719.7.fs 1/3 66 99 .. 1 34 [] 25.4 4.3e-06 PF07719.7.ls 1/1 66 99 .. 1 34 [] 27.4 4.6e-05 PF08238.2.fs 1/5 97 126 .. 1 52 [. 15.3 0.00095 PF08238.2.ls 1/5 97 132 .. 1 58 [] 14.2 0.24 PF08238.2.ls 2/5 140 175 .. 1 58 [] 32.2 1.7e-06 PF08238.2.fs 2/5 140 175 .. 1 58 [] 30.6 3.6e-08 PF08238.2.fs 3/5 180 213 .. 1 58 [] 20.7 2.6e-05 PF08238.2.ls 3/5 180 213 .. 1 58 [] 22.3 0.0016 PF08238.2.fs 4/5 214 249 .. 1 58 [] 33.7 4.4e-09 PF08238.2.ls 4/5 214 249 .. 1 58 [] 35.4 1.9e-07 PF08238.2.ls 5/5 304 339 .. 1 58 [] 20.5 0.0055 PF08238.2.fs 5/5 304 339 .. 1 58 [] 18.9 8.8e-05 Alignments of top-scoring domains: PF07719.7.fs: domain 1 of 3, from 66 to 99: score 25.4, E = 4.3e-06 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a++++G++y++ g yeeAle +e+ e d ++ KIAA1325 66 TLAYFLRGQLYFEEGWYEEALEQFEEIKEKDHQA 99 PF07719.7.ls: domain 1 of 1, from 66 to 99: score 27.4, E = 4.6e-05 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a++++G++y++ g yeeAle +e+ e d ++ KIAA1325 66 TLAYFLRGQLYFEEGWYEEALEQFEEIKEKDHQA 99 PF08238.2.fs: domain 1 of 5, from 97 to 126: score 15.3, E = 0.00095 *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA +A y+LG +y++Gl G ++ D ek + KIAA1325 97 HqATYQLG-------VMYYDGL------G--TTL------DAEK--G 120 lkwyek<-* + +++k KIAA1325 121 VDYMKK 126 PF08238.2.ls: domain 1 of 5, from 97 to 132: score 14.2, E = 0.24 *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA +A y+LG +y++Gl G ++ D ek + KIAA1325 97 HqATYQLG-------VMYYDGL------G--TTL------DAEK--G 120 lkwyekAAeqGn<-* + +++k + KIAA1325 121 VDYMKKILDSPC 132 PF08238.2.ls: domain 2 of 5, from 140 to 175: score 32.2, E = 1.7e-06 *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA A+ynLG ++y++G+ G v++ e+ A KIAA1325 140 FaAAYNLG-------RAYYEGK------G--VKR------SNEE--A 163 lkwyekAAeqGn<-* +++ AA++Gn KIAA1325 164 ERLWLIAADNGN 175 PF08238.2.fs: domain 2 of 5, from 140 to 175: score 30.6, E = 3.6e-08 *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA A+ynLG ++y++G+ G v++ e+ A KIAA1325 140 FaAAYNLG-------RAYYEGK------G--VKR------SNEE--A 163 lkwyekAAeqGn<-* +++ AA++Gn KIAA1325 164 ERLWLIAADNGN 175 PF08238.2.fs: domain 3 of 5, from 180 to 213: score 20.7, E = 2.6e-05 *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA ++Aq +LG lyy + pk +ek A KIAA1325 180 VkAQSMLG-----LYY---STK---------EPK------ELEK--A 201 lkwyekAAeqGn<-* ++w A+ +Gn KIAA1325 202 FYWHSEACGNGN 213 PF08238.2.ls: domain 3 of 5, from 180 to 213: score 22.3, E = 0.0016 *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA ++Aq +LG lyy + pk +ek A KIAA1325 180 VkAQSMLG-----LYY---STK---------EPK------ELEK--A 201 lkwyekAAeqGn<-* ++w A+ +Gn KIAA1325 202 FYWHSEACGNGN 213 PF08238.2.fs: domain 4 of 5, from 214 to 249: score 33.7, E = 4.4e-09 *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA ++q +LG ++yl+G+ G +++ D e A KIAA1325 214 LeSQGALG-------LMYLYGQ------G--IRQ------DTEA--A 237 lkwyekAAeqGn<-* l++++ AAe+Gn KIAA1325 238 LQCLREAAERGN 249 PF08238.2.ls: domain 4 of 5, from 214 to 249: score 35.4, E = 1.9e-07 *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA ++q +LG ++yl+G+ G +++ D e A KIAA1325 214 LeSQGALG-------LMYLYGQ------G--IRQ------DTEA--A 237 lkwyekAAeqGn<-* l++++ AAe+Gn KIAA1325 238 LQCLREAAERGN 249 PF08238.2.ls: domain 5 of 5, from 304 to 339: score 20.5, E = 0.0055 *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA a A ++ + ++++ Gl G +++ D A KIAA1325 304 AmASFYHA-------RCLQLGL------G--ITR------DETT--A 327 lkwyekAAeqGn<-* ++y kA++++ KIAA1325 328 KHYYSKACRLNP 339 PF08238.2.fs: domain 5 of 5, from 304 to 339: score 18.9, E = 8.8e-05 *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA a A ++ + ++++ Gl G +++ D A KIAA1325 304 AmASFYHA-------RCLQLGL------G--ITR------DETT--A 327 lkwyekAAeqGn<-* ++y kA++++ KIAA1325 328 KHYYSKACRLNP 339 //