# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh08302.fasta.huge -Q ../query/KIAA1307.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1307, 1678 aa
 vs ./tmplib.24314 library

1985827 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 5.1932+/-0.00492; mu= 16.1312+/- 0.335
 mean_var=92.3748+/-22.125, 0's: 0 Z-trim: 3  B-trim: 0 in 0/40
 Lambda= 0.133444

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 41, opt: 29, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0896  ( 2820 res)   hk08890s2                  (2820)  205 51.4 3.2e-06


>>KIAA0896  ( 2820 res)   hk08890s2                       (2820 aa)
 initn: 210 init1: 179 opt: 205  Z-score: 203.6  bits: 51.4 E(): 3.2e-06
Smith-Waterman score: 209;  25.281% identity (56.742% similar) in 178 aa overlap (794-950:1093-1266)

           770       780       790       800       810       820   
KIAA13 ATLASAGQGAGHLQLHNAAVDWLSRCKKYLSQKNVVEKLNANVMHGKHVMILECTCHIMS
                                     .. .:::. . .. ... .. : :   ...
KIAA08 FILAPAVGSLTTAATGTGQGPSTSTIPGPSTEPSVVESKDRKA-NAHFILKLLCDSVVLQ
           1070      1080      1090      1100       1110      1120 

            830       840       850        860       870           
KIAA13 -YLADVTNALSQSNGQGPSHLSVDGEERAIEVDS-DWVEELAVEEEDSQAEDSD------
        :: .. .: ... :. :   .:.:.     .   . ....:  : .:. .. :      
KIAA08 PYLRELLSA-KDARGMTPFMSAVSGRAYPAAITILETAQKIAKAEISSSEKEEDVFMGMV
            1130       1140      1150      1160      1170      1180

                     880       890       900       910       920   
KIAA13 -------EDS-----LCNKLCTFTITQKEFMNQHWYHCHTCKMVDGVGVCTVCAKVCHKD
              .::      ::  :.:: :  : .::  ..:.:: .....  :: ::.:::: 
KIAA08 CPSGTNPDDSPLYVLCCNDTCSFTWTGAEHINQDIFECRTCGLLESLCCCTECARVCHKG
             1190      1200      1210      1220      1230      1240

           930        940       950       960       970       980  
KIAA13 HEISYAKYG-SFFCDCGAKEDGSCLALVKRTPSSGMSSTMKESAFQSEPRISESLVRHAS
       :. .  . . . .:::   :  .: .:.                                
KIAA08 HDCKLKRTSPTAYCDC--WEKCKCKTLIAGQKSARLDLLYRLLTATNLVTLPNSRGEHLL
             1250        1260      1270      1280      1290        




1678 residues in 1 query   sequences
1985827 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:17:07 2008 done: Thu Dec 18 15:17:08 2008
 Total Scan time:  0.920 Total Display time:  0.090

Function used was FASTA [version 34.26.5 April 26, 2007]