hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-23075233/chunk_1/iprscan-20080501-23075233.nocrc
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Query sequence: KIAA1305
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00665.16.fs Integrase core domain                           18.6     0.0001   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00665.16.fs   1/1    1530  1598 ..     1    77 [.    18.6   0.0001

Alignments of top-scoring domains:
PF00665.16.fs: domain 1 of 1, from 1530 to 1598: score 18.6, E = 0.0001
                   *->r.srpnelwqmDitGpipvktkggkkyllvivDdfSrfivayplksk
                      r+++p+  +q+ ++Gp+   + +g+k++l + D  +r+++a+plk  
    KIAA1305  1530    RsTAPWSNLQIEVVGPVT-ISEEGHKHVLIVADPNTRWVEAFPLKPY 1575 

                   sdaetvlallkaalerrggkkgrpvdkpkii<-*
                    +  +v+++l++ +  r g+       p+++   
    KIAA1305  1576 -THTAVAQVLLQHVFARWGV-------PVRL    1598 

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