# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk09394.fasta.huge -Q ../query/KIAA1273.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1273, 606 aa
 vs ./tmplib.24314 library

1986899 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 7.3690+/-0.00789; mu= 2.5923+/- 0.531
 mean_var=264.3240+/-64.646, 0's: 0 Z-trim: 4  B-trim: 0 in 0/40
 Lambda= 0.078887

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1083  ( 584 res)   hj07423                     ( 584)  206 37.1   0.005


>>KIAA1083  ( 584 res)   hj07423                          (584 aa)
 initn: 183 init1: 109 opt: 206  Z-score: 146.2  bits: 37.1 E(): 0.005
Smith-Waterman score: 221;  28.283% identity (63.131% similar) in 198 aa overlap (300-492:340-521)

     270       280       290       300       310       320         
KIAA12 QDVLEGVVLSPSLEARVRDIAIATRNTKKNRGLYRHILLYGPPGTGKTLFAKKLALHSGM
                                     :.  : .::.::::.:::..:: .: .:. 
KIAA10 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA
     310       320       330       340       350       360         

     330       340         350       360       370         380     
KIAA12 DYAIMTGGDVAP--MGREGVTAMHKLFDWANTSRRGLLLFMDEADAFL--RKRATEEISK
        .  .......   .: ::   .. ::  :   . ... :.::.:..:  :... .. :.
KIAA10 TFFNISAASLTSKYVG-EGEKLVRALFAVARELQPSII-FIDEVDSLLCERREGEHDASR
     370       380        390       400        410       420       

         390        400       410       420       430       440    
KIAA12 DLRAT-LNAFLYHMGQHSNKFMLVLASNLPEQFDCAINSRIDVMVHFDLPQQEERERLVR
        :..  :  :   ..  ... ... :.: :...: :.  :.   :. .::..: :  :..
KIAA10 RLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLK
       430       440       450       460       470       480       

          450       460       470       480       490       500    
KIAA12 LHFDNCVLKPATEGKRRLKLAQFDYGRKCSEVARLTEGMSGREIAQLAVSWQATAYASKD
           : . : ..   .. .:::.         ::.:.:.:: ... ::            
KIAA10 ----NLLCKQGSPLTQK-ELAQL---------ARMTDGYSGSDLTALAKDAALGPIRELK
           490       500                 510       520       530   

          510       520       530       540       550       560    
KIAA12 GVLTEAMMDACVQDAVQQYRQKMRWLKAEGPGRGVEHPLSGVQGETLTSWSLATDPSYPC
                                                                   
KIAA10 PEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGDTTV         
           540       550       560       570       580             




606 residues in 1 query   sequences
1986899 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:15:41 2008 done: Thu Dec 18 15:15:42 2008
 Total Scan time:  0.490 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]