hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-22050971/chunk_1/iprscan-20080501-22050971.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1268
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01661.11.ls Appr-1-p processing enzyme family              349.9   3.9e-102   3
PF01661.11.fs Appr-1-p processing enzyme family              344.2     2e-100   3
PF02825.10.fs WWE domain                                      98.7    1.1e-27   1
PF02825.10.ls WWE domain                                     100.6    4.3e-27   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01661.11.fs   1/3     163   280 ..     1   125 []   180.0  5.5e-51
PF01661.11.ls   1/3     163   280 ..     1   125 []   181.9  1.4e-51
PF01661.11.ls   2/3     375   491 ..     1   125 []   119.6  8.3e-33
PF01661.11.fs   2/3     375   491 ..     1   125 []   117.7  1.8e-32
PF01661.11.fs   3/3     588   690 ..     1   125 []    46.6  1.5e-12
PF01661.11.ls   3/3     588   690 ..     1   125 []    48.4  2.3e-11
PF02825.10.ls   1/1     866   944 ..     1    89 []   100.6  4.3e-27
PF02825.10.fs   1/1     866   944 ..     1    89 []    98.7  1.1e-27

Alignments of top-scoring domains:
PF01661.11.fs: domain 1 of 3, from 163 to 280: score 180.0, E = 5.5e-51
                   *->VNAANssLlgcfpGGGVagAIhraaGpeLleecrelikkqggsdecp
                      VNA N++L++    GG+a+A+ +aaGpeL++ c++++k +g+   + 
    KIAA1268   163    VNASNEDLKH---YGGLAAALSKAAGPELQADCDQIVKREGR---LL 203  

                   tGeAviTpggnLpakyVIHtVGPiwrggfggeeeeelLasaYrnsLelAe
                   +G+A i ++g+Lp+++VIH+VGP+w+g    +++ +lL++a + sL+lAe
    KIAA1268   204 PGNATISKAGKLPYHHVIHAVGPRWSGY-EAPRCVYLLRRAVQLSLCLAE 252  

                   elglksiAfPaISTGiyGfPkeeaaeia<-*
                   +++++siA+PaIS+G++GfP+ +++e +   
    KIAA1268   253 KYKYRSIAIPAISSGVFGFPLGRCVETI    280  

PF01661.11.ls: domain 1 of 3, from 163 to 280: score 181.9, E = 1.4e-51
                   *->VNAANssLlgcfpGGGVagAIhraaGpeLleecrelikkqggsdecp
                      VNA N++L++    GG+a+A+ +aaGpeL++ c++++k +g+   + 
    KIAA1268   163    VNASNEDLKH---YGGLAAALSKAAGPELQADCDQIVKREGR---LL 203  

                   tGeAviTpggnLpakyVIHtVGPiwrggfggeeeeelLasaYrnsLelAe
                   +G+A i ++g+Lp+++VIH+VGP+w+g    +++ +lL++a + sL+lAe
    KIAA1268   204 PGNATISKAGKLPYHHVIHAVGPRWSGY-EAPRCVYLLRRAVQLSLCLAE 252  

                   elglksiAfPaISTGiyGfPkeeaaeia<-*
                   +++++siA+PaIS+G++GfP+ +++e +   
    KIAA1268   253 KYKYRSIAIPAISSGVFGFPLGRCVETI    280  

PF01661.11.ls: domain 2 of 3, from 375 to 491: score 119.6, E = 8.3e-33
                   *->VNAANssLlgcfpGGG.VagAIhraaGpeLleecrelikkqggsdec
                      VN++  +L+      G++++ + ++aGpeL+ee +++ +       +
    KIAA1268   375    VNSVPLDLVL---SRGpLSKSLLEKAGPELQEELDTVGQGVA----V 414  

                   ptGeAviTpggnLpakyVIHtVGPiwrggfggeeeeelLasaYrnsLelA
                     G++  T++ nL+++yV+H+V+P wr + g++++ +  ++ +r+++e+ 
    KIAA1268   415 SMGTVLKTSSWNLDCRYVLHVVAPEWR-N-GSTSSLKIMEDIIRECMEIT 462  

                   eelglksiAfPaISTGiyGfPkeeaaeia<-*
                   e l lksiAfPaI+TG+ GfPk   ae++   
    KIAA1268   463 ESLSLKSIAFPAIGTGNLGFPKNIFAELI    491  

PF01661.11.fs: domain 2 of 3, from 375 to 491: score 117.7, E = 1.8e-32
                   *->VNAANssLlgcfpGGG.VagAIhraaGpeLleecrelikkqggsdec
                      VN++  +L+      G++++ + ++aGpeL+ee +++ +       +
    KIAA1268   375    VNSVPLDLVL---SRGpLSKSLLEKAGPELQEELDTVGQGVA----V 414  

                   ptGeAviTpggnLpakyVIHtVGPiwrggfggeeeeelLasaYrnsLelA
                     G++  T++ nL+++yV+H+V+P wr + g++++ +  ++ +r+++e+ 
    KIAA1268   415 SMGTVLKTSSWNLDCRYVLHVVAPEWR-N-GSTSSLKIMEDIIRECMEIT 462  

                   eelglksiAfPaISTGiyGfPkeeaaeia<-*
                   e l lksiAfPaI+TG+ GfPk   ae++   
    KIAA1268   463 ESLSLKSIAFPAIGTGNLGFPKNIFAELI    491  

PF01661.11.fs: domain 3 of 3, from 588 to 690: score 46.6, E = 1.5e-12
                   *->VNAANssLlgcfpGGGVagAIhraaGpeLleecrelikkqggsdecp
                      VN++  s+       GV++AI + aG   ++ec +  ++ +      
    KIAA1268   588    VNSTSNSFNL---KAGVSKAILECAGQNVERECSQQAQQRKN----- 626  

                   tGeAviTpggnLpakyVIHtVGPiwrggfggeeeeelLasaYrnsLelAe
                     +  iT+gg L +k +IH+             + ++ +s+  ++L+++e
    KIAA1268   627 --DYIITGGGFLRCKNIIHV------------IGGNDVKSSVSSVLQECE 662  

                   elglksiAfPaISTGiyGfPkeeaaeia<-*
                   ++++ si +PaI+TG+    ++ +ae++   
    KIAA1268   663 KKNYSSICLPAIGTGNAKQHPDKVAEAI    690  

PF01661.11.ls: domain 3 of 3, from 588 to 690: score 48.4, E = 2.3e-11
                   *->VNAANssLlgcfpGGGVagAIhraaGpeLleecrelikkqggsdecp
                      VN++  s+       GV++AI + aG   ++ec +  ++ +      
    KIAA1268   588    VNSTSNSFNL---KAGVSKAILECAGQNVERECSQQAQQRKN----- 626  

                   tGeAviTpggnLpakyVIHtVGPiwrggfggeeeeelLasaYrnsLelAe
                     +  iT+gg L +k +IH+             + ++ +s+  ++L+++e
    KIAA1268   627 --DYIITGGGFLRCKNIIHV------------IGGNDVKSSVSSVLQECE 662  

                   elglksiAfPaISTGiyGfPkeeaaeia<-*
                   ++++ si +PaI+TG+    ++ +ae++   
    KIAA1268   663 KKNYSSICLPAIGTGNAKQHPDKVAEAI    690  

PF02825.10.ls: domain 1 of 1, from 866 to 944: score 100.6, E = 4.3e-27
                   *->svappsnvagikvvvWeyerSvddnggWrpYsphvsrlIEnayaakk
                      ++++++++++ ++++W+y+    dn+++++++++++ ++E+a+++kk
    KIAA1268   866    EQESRADCIS-EFIEWQYN----DNNTSHCFNKMTNLKLEDARREKK 907  

                   kGsVtleqvCsicGrpYtidfntmtQlreetgslsttReVrR<-*
                   k   t++ v +i++r+Yt+++nt+t ++++ +sls++R +++   
    KIAA1268   908 K---TVD-V-KINHRHYTVNLNTYTATDTKGHSLSVQRLTKS    944  

PF02825.10.fs: domain 1 of 1, from 866 to 944: score 98.7, E = 1.1e-27
                   *->svappsnvagikvvvWeyerSvddnggWrpYsphvsrlIEnayaakk
                      ++++++++++ ++++W+y+    dn+++++++++++ ++E+a+++kk
    KIAA1268   866    EQESRADCIS-EFIEWQYN----DNNTSHCFNKMTNLKLEDARREKK 907  

                   kGsVtleqvCsicGrpYtidfntmtQlreetgslsttReVrR<-*
                   k   t++ v +i++r+Yt+++nt+t ++++ +sls++R +++   
    KIAA1268   908 K---TVD-V-KINHRHYTVNLNTYTATDTKGHSLSVQRLTKS    944  

//