hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21533741/chunk_1/iprscan-20080501-21533741.nocrc
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Query sequence: KIAA1261
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03920.5.fs Groucho/TLE N-terminal Q-rich domain           325.3    1.8e-95   1
PF03920.5.ls Groucho/TLE N-terminal Q-rich domain           327.2    2.6e-95   1
PF00400.22.ls WD domain, G-beta repeat                       141.3    2.4e-39   6
PF00400.22.fs WD domain, G-beta repeat                       130.5    4.2e-36   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03920.5.ls   1/1      22   155 ..     1   138 []   327.2  2.6e-95
PF03920.5.fs   1/1      22   155 ..     1   138 []   325.3  1.8e-95
PF00400.22.fs   1/6     492   528 ..     1    38 []    16.1   0.0014
PF00400.22.fs   2/6     548   575 ..    10    38 .]    13.5   0.0077
PF00400.22.ls   3/6     581   619 ..     1    38 []    28.3  2.6e-05
PF00400.22.fs   3/6     581   619 ..     1    38 []    26.3  1.9e-06
PF00400.22.ls   4/6     623   661 ..     1    38 []    39.0  1.5e-08
PF00400.22.fs   4/6     623   661 ..     1    38 []    37.1  1.8e-09
PF00400.22.fs   5/6     705   743 ..     1    38 []    21.9  3.3e-05
PF00400.22.ls   5/6     705   743 ..     1    38 []    23.9  0.00054
PF00400.22.fs   6/6     756   784 ..     9    38 .]    15.6    0.002

Alignments of top-scoring domains:
PF03920.5.ls: domain 1 of 1, from 22 to 155: score 327.2, E = 2.6e-95
                   *->myPqsrrhpaalqapqqgplKftvaesldRiKeEFqfLqaqYHslKl
                      myPq+r hpa++q+ q+  +Kft++es+dRiKeEFqfLqaqYHslKl
    KIAA1261    22    MYPQTR-HPAPHQPAQP--FKFTISESCDRIKEEFQFLQAQYHSLKL 65   

                   EceKLasEKtEmqRHYvmYYEmsYGLniEmHKqaEivKRLnaiiaqllPf
                   EceKLasEKtEmqRHYvmYYEmsYGLniEmHKqaEivKRLnai+aq++Pf
    KIAA1261    66 ECEKLASEKTEMQRHYVMYYEMSYGLNIEMHKQAEIVKRLNAICAQVIPF 115  

                   LsqeHqqqvlqAveRAKqvtmaELnaiigqqqlqaqqlsha<-*
                   LsqeHqqqv+qAveRAKqvtmaELnaiigqq lqaq+lsh    
    KIAA1261   116 LSQEHQQQVVQAVERAKQVTMAELNAIIGQQ-LQAQHLSHG    155  

PF03920.5.fs: domain 1 of 1, from 22 to 155: score 325.3, E = 1.8e-95
                   *->myPqsrrhpaalqapqqgplKftvaesldRiKeEFqfLqaqYHslKl
                      myPq+r hpa++q+ q+  +Kft++es+dRiKeEFqfLqaqYHslKl
    KIAA1261    22    MYPQTR-HPAPHQPAQP--FKFTISESCDRIKEEFQFLQAQYHSLKL 65   

                   EceKLasEKtEmqRHYvmYYEmsYGLniEmHKqaEivKRLnaiiaqllPf
                   EceKLasEKtEmqRHYvmYYEmsYGLniEmHKqaEivKRLnai+aq++Pf
    KIAA1261    66 ECEKLASEKTEMQRHYVMYYEMSYGLNIEMHKQAEIVKRLNAICAQVIPF 115  

                   LsqeHqqqvlqAveRAKqvtmaELnaiigqqqlqaqqlsha<-*
                   LsqeHqqqv+qAveRAKqvtmaELnaiigqq lqaq+lsh    
    KIAA1261   116 LSQEHQQQVVQAVERAKQVTMAELNAIIGQQ-LQAQHLSHG    155  

PF00400.22.fs: domain 1 of 6, from 492 to 528: score 16.1, E = 0.0014
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                        ++++l++    V++v +s +  +++ +g+  g++k+Wd   
    KIAA1261   492    ARQInTLnHG-EVVCAVTISNP-TRHVYTGGK-GCVKVWD    528  

PF00400.22.fs: domain 2 of 6, from 548 to 575: score 13.5, E = 0.0077
                   *->stVtcvafspdsgpllasgSrDgtikiWd<-*
                      + +++++  pd g++l+ g++  t+ iWd   
    KIAA1261   548    NYIRSCRLLPD-GRTLIVGGEASTLSIWD    575  

PF00400.22.ls: domain 3 of 6, from 581 to 619: score 28.3, E = 2.6e-05
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                         k +l+    +++++a+spd +++++s+++Dg+i +Wd   
    KIAA1261   581    PRIKaELtSSAPACYALAISPD-SKVCFSCCSDGNIAVWD    619  

PF00400.22.fs: domain 3 of 6, from 581 to 619: score 26.3, E = 1.9e-06
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                         k +l+    +++++a+spd +++++s+++Dg+i +Wd   
    KIAA1261   581    PRIKaELtSSAPACYALAISPD-SKVCFSCCSDGNIAVWD    619  

PF00400.22.ls: domain 4 of 6, from 623 to 661: score 39.0, E = 1.5e-08
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       ++++ ++gHt++ +c+++s d g+ l +g+ D+t++ Wd   
    KIAA1261   623    QTLVrQFqGHTDGASCIDISND-GTKLWTGGLDNTVRSWD    661  

PF00400.22.fs: domain 4 of 6, from 623 to 661: score 37.1, E = 1.8e-09
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       ++++ ++gHt++ +c+++s d g+ l +g+ D+t++ Wd   
    KIAA1261   623    QTLVrQFqGHTDGASCIDISND-GTKLWTGGLDNTVRSWD    661  

PF00400.22.fs: domain 5 of 6, from 705 to 743: score 21.9, E = 3.3e-05
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      +  k  l+ H+s V +++f++  g++++s + D+ +  W    
    KIAA1261   705    KPDKyQLhLHESCVLSLKFAHC-GKWFVSTGKDNLLNAWR    743  

PF00400.22.ls: domain 5 of 6, from 705 to 743: score 23.9, E = 0.00054
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      +  k  l+ H+s V +++f++  g++++s + D+ +  W    
    KIAA1261   705    KPDKyQLhLHESCVLSLKFAHC-GKWFVSTGKDNLLNAWR    743  

PF00400.22.fs: domain 6 of 6, from 756 to 784: score 15.6, E = 0.002
                   *->tstVtcvafspdsgpllasgSrDgtikiWd<-*
                      +s+V ++++s d  +++++gS D++  +++   
    KIAA1261   756    SSSVLSCDISVD-DKYIVTGSGDKKATVYE    784  

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