hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21365600/chunk_1/iprscan-20080501-21365600.nocrc
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Query sequence: KIAA1251
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00435.11.fs Spectrin repeat                                 85.4    6.9e-25   6
PF00435.11.ls Spectrin repeat                                 67.9      3e-17   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00435.11.ls   1/4     680   792 ..     1   111 []     4.8    0.016
PF00435.11.fs   3/6     948  1024 ..     1    82 [.    23.7  1.6e-06
PF00435.11.ls   2/4     948  1051 ..     1   111 []    22.4   0.0006
PF00435.11.fs   4/6    1065  1175 ..     1   111 []    37.8    1e-10
PF00435.11.ls   3/4    1065  1175 ..     1   111 []    39.7  9.2e-09
PF00435.11.ls   4/4    1178  1284 ..     1   111 []     1.0    0.032

Alignments of top-scoring domains:
PF00435.11.ls: domain 1 of 4, from 680 to 792: score 4.8, E = 0.016
                   *->lllqqFqrdaddlesWieekealLssedyegkdleevqaLlkql.kH
                      +++   +++++dl sW  ++e+ L+       + +++ aL+k  + +
    KIAA1251   680    KQQNTCHQQLEDLCSWVGQAERALAGHQG-RTTQQDLSALQKNQsDL 725  

                   kaleaelaahqdrvealninelaekLiideg.....hyaseeiqerleeL
                   k+l+++++++ + + ++   +  e + ++e++++ ++ +  +++e+l + 
    KIAA1251   726 KDLQDDIQNRATSFATVV--KDIEGF-MEENqtklsPRELTALREKLHQA 772  

                   nerWeqLlelaaeRkqkLee<-*
                    e++e+L+e +   +++Lee   
    KIAA1251   773 KEQYEALQEETRVAQKELEE    792  

PF00435.11.fs: domain 3 of 6, from 948 to 1024: score 23.7, E = 1.6e-06
                   *->lllqqFqrdaddlesWieekealLssedyegkdleevqaLlkqlkHk
                       +lq+F++d +++esW+e  e+ L ++ ++g ++e++ +Llk  ++ 
    KIAA1251   948    DELQKFLQDHKEFESWLERSEKELENMHKGGSSPETLPSLLK--RQG 992  

                   aleaelaahqdrvealninelaekLiideghyase<-*
                    + +++  h++ ++ ++    ++k+ +d +  + e   
    KIAA1251   993 SFSEDVISHKGDLRFVT--ISGQKV-LDMENSFKE    1024 

PF00435.11.ls: domain 2 of 4, from 948 to 1051: score 22.4, E = 0.0006
                   *->lllqqFqrdaddlesWieekealLssedyegkdleevqaLlkqlkHk
                       +lq+F++d +++esW+e  e+ L ++ ++g ++e++ +Llk  ++ 
    KIAA1251   948    DELQKFLQDHKEFESWLERSEKELENMHKGGSSPETLPSLLK--RQG 992  

                   aleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerWeq
                    + +++  h++ ++ ++    ++k+ +d +  +     +  +e+  + ++
    KIAA1251   993 SFSEDVISHKGDLRFVT--ISGQKV-LDMENSFK--EGKEPSEIGNLVKD 1037 

                   LlelaaeRkqkLee<-*
                    l+ a eR  +L+    
    KIAA1251  1038 KLKDATERYTALHS    1051 

PF00435.11.fs: domain 4 of 6, from 1065 to 1175: score 37.8, E = 1e-10
                   *->lllqqFqrdaddlesWieekealLssedyegkdleevqaLlkql.kH
                       +++qFq+ ad l++W++  ea + +  +     +++ +L++ql   
    KIAA1251  1065    GQYHQFQNSADSLQAWMQACEANV-EKLLSDTVASDPGVLQEQLaTT 1110 

                   kaleaelaahqdrvealninelaekLiideg...hyaseeiqerleeLne
                   k+l++ela hq  ve+l+  ++a+++ ++ ++++ +++ ++qe+ + + +
    KIAA1251  1111 KQLQEELAEHQVPVEKLQ--KVARDI-MEIEgepAPDHRHVQETTDSILS 1157 

                   rWeqLlelaaeRkqkLee<-*
                   ++++L   +aeR   L+    
    KIAA1251  1158 HFQSLSYSLAERSSLLQK    1175 

PF00435.11.ls: domain 3 of 4, from 1065 to 1175: score 39.7, E = 9.2e-09
                   *->lllqqFqrdaddlesWieekealLssedyegkdleevqaLlkql.kH
                       +++qFq+ ad l++W++  ea + +  +     +++ +L++ql   
    KIAA1251  1065    GQYHQFQNSADSLQAWMQACEANV-EKLLSDTVASDPGVLQEQLaTT 1110 

                   kaleaelaahqdrvealninelaekLiideg...hyaseeiqerleeLne
                   k+l++ela hq  ve+l+  ++a+++ ++ ++++ +++ ++qe+ + + +
    KIAA1251  1111 KQLQEELAEHQVPVEKLQ--KVARDI-MEIEgepAPDHRHVQETTDSILS 1157 

                   rWeqLlelaaeRkqkLee<-*
                   ++++L   +aeR   L+    
    KIAA1251  1158 HFQSLSYSLAERSSLLQK    1175 

PF00435.11.ls: domain 4 of 4, from 1178 to 1284: score 1.0, E = 0.032
                   *->lllqqFqrdaddlesWieekealLssedyegkdleevqaLlkql.kH
                       + q  q  ++ l++ i e e+ L    +   +  +  +++++l   
    KIAA1251  1178    AQSQSVQESLESLLQSIGEVEQNLEGKQV---SSLSSGVIQEALaTN 1221 

                   kaleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerWe
                     l+ ++a ++  +ea    e+  ++++++   ++  +q +l+e+ +r+e
    KIAA1251  1222 MKLKQDIARQKSSLEATR--EMVTRFMETADSTTAAVLQGKLAEVSQRFE 1269 

                   qLlelaaeRkqkLee<-*
                   qL+ + +e++  L     
    KIAA1251  1270 QLCLQQQEKESSLKK    1284 

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