hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-21333087/chunk_1/iprscan-20080501-21333087.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1249 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01412.9.fs Putative GTPase activating protein for Arf 132.8 6.8e-38 1 PF01412.9.ls Putative GTPase activating protein for Arf 134.7 2.3e-37 1 PF00169.19.fs PH domain 58.1 3.2e-17 1 PF00169.19.ls PH domain 60.1 6.8e-15 1 PF00018.18.fs SH3 domain 47.0 4.6e-12 1 PF00018.18.ls SH3 domain 48.9 1.6e-11 1 PF00023.20.fs Ankyrin repeat 40.8 2.1e-10 2 PF00023.20.ls Ankyrin repeat 44.8 2.7e-10 2 PF07653.7.fs Variant SH3 domain 32.2 1.2e-08 1 PF07653.7.ls Variant SH3 domain 34.0 4.8e-07 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00169.19.ls 1/1 145 236 .. 1 92 [] 60.1 6.8e-15 PF00169.19.fs 1/1 145 236 .. 1 92 [] 58.1 3.2e-17 PF01412.9.ls 1/1 259 382 .. 1 137 [] 134.7 2.3e-37 PF01412.9.fs 1/1 259 382 .. 1 137 [] 132.8 6.8e-38 PF00023.20.fs 1/2 420 455 .. 1 33 [] 21.9 3.9e-05 PF00023.20.ls 1/2 420 455 .. 1 33 [] 23.9 0.00051 PF00023.20.fs 2/2 456 488 .. 1 33 [] 18.9 0.00028 PF00023.20.ls 2/2 456 488 .. 1 33 [] 20.9 0.0043 PF00018.18.fs 1/1 890 947 .. 1 59 [] 47.0 4.6e-12 PF00018.18.ls 1/1 890 947 .. 1 59 [] 48.9 1.6e-11 PF07653.7.fs 1/1 891 947 .. 1 69 [] 32.2 1.2e-08 PF07653.7.ls 1/1 891 947 .. 1 69 [] 34.0 4.8e-07 Alignments of top-scoring domains: PF00169.19.ls: domain 1 of 1, from 145 to 236: score 60.1, E = 6.8e-15 *->vikeGwLlkkg..gkkswkkRyfvLfddvLlyykdkkkkpkgsipLs +k+G+Llkk+++ +k w++R + ++++ L++ + + +++L KIAA1249 145 SEKKGYLLKKSdgIRKVWQRRKCSVKNGILTISHATSNRQPAKLNLL 191 giqvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsair<- ++qv++ + +k +F +++++r t+++qae+e++ W++ + ++ KIAA1249 192 TCQVKPNAE--DKKSFDLIShNR-TYHFQAEDEQDYVAWISVLTNSKE 236 * KIAA1249 - - PF00169.19.fs: domain 1 of 1, from 145 to 236: score 58.1, E = 3.2e-17 *->vikeGwLlkkg..gkkswkkRyfvLfddvLlyykdkkkkpkgsipLs +k+G+Llkk+++ +k w++R + ++++ L++ + + +++L KIAA1249 145 SEKKGYLLKKSdgIRKVWQRRKCSVKNGILTISHATSNRQPAKLNLL 191 giqvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsair<- ++qv++ + +k +F +++++r t+++qae+e++ W++ + ++ KIAA1249 192 TCQVKPNAE--DKKSFDLIShNR-TYHFQAEDEQDYVAWISVLTNSKE 236 * KIAA1249 - - PF01412.9.ls: domain 1 of 1, from 259 to 382: score 134.7, E = 2.3e-37 *->qrvlqlLrsldpgNkkCfDCgavpnPtWaSvnlGvflCieCSGiHRn ++ ++++++l+ gN C+DCg+ +PtW S nlG++ CieCSGiHR KIAA1249 259 KAIIEDVQRLP-GNDICCDCGS-SEPTWLSTNLGILTCIECSGIHRE 303 LfGvHiSkVnvRSltLDsWtpeelrklesckgGNenansfwEsnlddfsl + GvHiS++ Sl LD+ el++ + + GN+ +n + E+nl+ +s KIAA1249 304 M-GVHISRI--QSLELDKLGTSELLLAK--NVGNNSFNDIMEANLPSPSP 348 kpkdsdaaavKCqddrqkyesfiaaKYeeklf..vlkeeqee<-* kp++s+ d +++++i aKY++++f++ + +++ KIAA1249 349 KPTPSS--------DMTVRKEYITAKYVDHRFsrKTCSTSSA 382 PF01412.9.fs: domain 1 of 1, from 259 to 382: score 132.8, E = 6.8e-38 *->qrvlqlLrsldpgNkkCfDCgavpnPtWaSvnlGvflCieCSGiHRn ++ ++++++l+ gN C+DCg+ +PtW S nlG++ CieCSGiHR KIAA1249 259 KAIIEDVQRLP-GNDICCDCGS-SEPTWLSTNLGILTCIECSGIHRE 303 LfGvHiSkVnvRSltLDsWtpeelrklesckgGNenansfwEsnlddfsl + GvHiS++ Sl LD+ el++ + + GN+ +n + E+nl+ +s KIAA1249 304 M-GVHISRI--QSLELDKLGTSELLLAK--NVGNNSFNDIMEANLPSPSP 348 kpkdsdaaavKCqddrqkyesfiaaKYeeklf..vlkeeqee<-* kp++s+ d +++++i aKY++++f++ + +++ KIAA1249 349 KPTPSS--------DMTVRKEYITAKYVDHRFsrKTCSTSSA 382 PF00023.20.fs: domain 1 of 2, from 420 to 455: score 21.9, E = 3.9e-05 *->dGfTPLHlAalrg...nlevvklLlsqGAdlnaqdd<-* G+T+LHlA++ + +l +v +L+++ +l+ q+ KIAA1249 420 LGETALHLAVRTAdqtSLHLVDFLVQNCGNLDKQTA 455 PF00023.20.ls: domain 1 of 2, from 420 to 455: score 23.9, E = 0.00051 *->dGfTPLHlAalrg...nlevvklLlsqGAdlnaqdd<-* G+T+LHlA++ + +l +v +L+++ +l+ q+ KIAA1249 420 LGETALHLAVRTAdqtSLHLVDFLVQNCGNLDKQTA 455 PF00023.20.fs: domain 2 of 2, from 456 to 488: score 18.9, E = 0.00028 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T LH+ +++ +e++klLl +++++ KIAA1249 456 LGNTVLHYCSMYSKPECLKLLLRSKPTVDIVNQ 488 PF00023.20.ls: domain 2 of 2, from 456 to 488: score 20.9, E = 0.0043 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T LH+ +++ +e++klLl +++++ KIAA1249 456 LGNTVLHYCSMYSKPECLKLLLRSKPTVDIVNQ 488 PF00018.18.fs: domain 1 of 1, from 890 to 947: score 47.0, E = 4.6e-12 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgG. ++v+ +YD +a ++dEL+F +G+vi+v ++d +WW g G+ KIAA1249 890 RRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQ-EWWIGHIE---Gq 932 ..keGliPsNYVepv<-* ++++G +P+++V KIAA1249 933 peRKGVFPVSFVHIL 947 PF00018.18.ls: domain 1 of 1, from 890 to 947: score 48.9, E = 1.6e-11 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgG. ++v+ +YD +a ++dEL+F +G+vi+v ++d +WW g G+ KIAA1249 890 RRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQ-EWWIGHIE---Gq 932 ..keGliPsNYVepv<-* ++++G +P+++V KIAA1249 933 peRKGVFPVSFVHIL 947 PF07653.7.fs: domain 1 of 1, from 891 to 947: score 32.2, E = 1.2e-08 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe ++++i d+ a + +e L++ +G+v+ V+ +++d +ww KIAA1249 891 RVKTIYDCQA-DNDDE------LTFIEGEVIIVT----GEEDQEWWI 926 g.eslgg..GrrrRGlvPssaveel<-* g+ + g++ r+ G++P s+v +l KIAA1249 927 GhIE--GqpERK--GVFPVSFVHIL 947 PF07653.7.ls: domain 1 of 1, from 891 to 947: score 34.0, E = 4.8e-07 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe ++++i d+ a + +e L++ +G+v+ V+ +++d +ww KIAA1249 891 RVKTIYDCQA-DNDDE------LTFIEGEVIIVT----GEEDQEWWI 926 g.eslgg..GrrrRGlvPssaveel<-* g+ + g++ r+ G++P s+v +l KIAA1249 927 GhIE--GqpERK--GVFPVSFVHIL 947 //