hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21152319/chunk_1/iprscan-20080501-21152319.nocrc
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Query sequence: KIAA1239
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                  49.6      4e-10   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/5     361   417 ..     1    46 []     3.2  1.6e+02
SM00320    2/5     420   459 ..     1    46 []    18.6     0.56
SM00320    3/5     685   724 ..     1    46 []    20.5     0.24
SM00320    4/5     769   807 ..     1    46 []     5.8       59
SM00320    5/5     808   847 ..     1    46 []     1.6  2.7e+02

Alignments of top-scoring domains:
SM00320: domain 1 of 5, from 361 to 417: score 3.2, E = 1.6e+02
                   *->t.kllrtlkgHtgespVtsvafspdggss.............dspnl
                       +k +++ + H++     +v++sp   + ++++ + ++  ++ +p+ 
    KIAA1239   361    GpKYCSIVPLHSS----MDVTYSPERLPLssshlhvteilptCNPST 403  

                   lasgs.DgtirlWd<-*
                   ++++ ++g+i  Wd   
    KIAA1239   404 VLTALeNGSISTWD    417  

SM00320: domain 2 of 5, from 420 to 459: score 18.6, E = 0.56
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t++llr ++  ++   +++++  +d       ++l+++ +++t+ ++
    KIAA1239   420    TrQLLRQITTAQS--VILGMKLTSDE------KYLVVATtNNTLLIY 458  

                   d<-*
                   d   
    KIAA1239   459 D    459  

SM00320: domain 3 of 5, from 685 to 724: score 20.5, E = 0.24
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t+++ ++l+  +g  ++  +  s+++      n+l+s s+ g + +W
    KIAA1239   685    TgQCMASLQEISG--SIVKLVKSSHH------NMLLSLStSGVLSIW 723  

                   d<-*
                   d   
    KIAA1239   724 D    724  

SM00320: domain 4 of 5, from 769 to 807: score 5.8, E = 59
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++   +++k H+g   V ++   ++g      ++++++++ ++ ++W
    KIAA1239   769    SgFIEAVFK-HEG--IVEHCVLTSTG------DIMVTSDdKSSQYVW 806  

                   d<-*
                   +   
    KIAA1239   807 H    807  

SM00320: domain 5 of 5, from 808 to 847: score 1.6, E = 2.7e+02
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t++    ++   +  +++ + + +++      ++++s ++ +  r+W
    KIAA1239   808    TsSGENLFRINGQ--RISQLLITHND------QFVVSLCeENASRVW 846  

                   d<-*
                       
    KIAA1239   847 R    847  

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