hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21134672/chunk_1/iprscan-20080501-21134672.nocrc
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Query sequence: KIAA1238
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TIGR00768 rimK_fam: alpha-L-glutamate ligases, RimK fa   579.0   1.5e-171   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TIGR00768   1/1      30   325 ..     1   321 []   579.0 1.5e-171

Alignments of top-scoring domains:
TIGR00768: domain 1 of 1, from 30 to 325: score 579.0, E = 1.5e-171
                   *->KlailydiaireiyirlydekmLkeaaeergidykvvtppeivltfn
                      Kl++l+d++ire+y++++++++Lk++++e+++d+++v+++e+vlt++
    KIAA1238    30    KLWFLTDRRIREDYPQKEILRALKAKCCEEELDFRAVVMDEVVLTIE 76   

                   qPaafsIfykeprknkelalaeldvvivRigTPWvssfrglavlraLEsl
                   q      +++++r+n+el++a+++vv+vR++TPWv+s+++++vlr+LE++
    KIAA1238    77 Q------GNLGLRINGELITAYPQVVVVRVPTPWVQSDSDITVLRHLEKM 120  

                   GvpviNssqaIlnagDKvlshqlLakaGvPlPrtgvagPQNFDREWspee
                   G++++N++qaIln+++K++++q+La++GvPlP+t+++g        ++e+
    KIAA1238   121 GCRLMNRPQAILNCVNKFWTFQELAGHGVPLPDTFSYG--------GHEN 162  

                   alklieeigqlEfPvVlKpvfGSwGrlVsLarDkqaaetllehfeqlngp
                   ++k+i+e+++lEfP+V+K+++G++G++V+LarDk+++++l+++++++++ 
    KIAA1238   163 FAKMIDEAEVLEFPMVVKNTRGHRGKAVFLARDKHHLADLSHLIRHEAP- 211  

                   qykvflvQEYIkPVkpggRDIRvfVVGdevvaAiyRiitsghwrtNlarG
                       +l+Q+Y+k  +++gRD+Rv+VVG++vv+++ R++t+g++++N+++G
    KIAA1238   212 ----YLFQKYVK--ESHGRDVRVIVVGGRVVGTMLRCSTDGRMQSNCSLG 255  

                   GkAepcslteeieeLAikAakalgldvaGiDlleskdrdDWgGLlVlEVN
                   G++++csl+e++++LAi+++++lg+dv+GiDll+++d    g+++V+E+N
    KIAA1238   256 GVGMMCSLSEQGKQLAIQVSNILGMDVCGIDLLMKDD----GSFCVCEAN 301  

                   anpeFknsvkttGvNIAgklldyi<-*
                   an++F++++k++++++Ag+++dy+   
    KIAA1238   302 ANVGFIAFDKACNLDVAGIIADYA    325  

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