hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21134672/chunk_1/iprscan-20080501-21134672.nocrc
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Query sequence: KIAA1238
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF08443.2.ls RimK-like ATP-grasp domain                  155.2    1.5e-43   1
PF08443.2.fs RimK-like ATP-grasp domain                  153.3      6e-43   1
PF02655.5.ls ATP-grasp domain                            -35.2     0.0026   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF08443.2.fs   1/1     134   325 ..     1   209 []   153.3    6e-43
PF02655.5.ls   1/1     134   294 ..     1   190 []   -35.2   0.0026
PF08443.2.ls   1/1     134   325 ..     1   209 []   155.2  1.5e-43

Alignments of top-scoring domains:
PF08443.2.fs: domain 1 of 1, from 134 to 325: score 153.3, E = 6e-43
                   *->ArDKvkSlqlLakkgTiKqiPTLIpvPntglafseedaekfIEkikR
                        +K+   q La +g        +p+P t   ++ e   k+I++   
    KIAA1238   134    CVNKFWTFQELAGHG--------VPLPDTFSYGGHENFAKMIDEAE- 171  

                   ClgfPvVvKsvfGsqGigVflaedkqsLeqlleafkqlknaiyeiklvQe
                    l fP VvK+  G  G  Vfla+dk  L  l ++     ++     l+Q 
    KIAA1238   172 VLEFPMVVKNTRGHRGKAVFLARDKHHLADL-SHLIRHEAPY----LFQK 216  

                   FIeeagnDLYrDiRclVVggeVVgAirRvskeGdFRtNlhrGgvaEkldl
                   + +e+ +   rD+R++VVgg VVg++ R s +G   +N+ +Ggv+  ++l
    KIAA1238   217 YVKESHG---RDVRVIVVGGRVVGTMLRCSTDGRMQSNCSLGGVGMMCSL 263  

                   seEeeeiAIkaaeamgldvlGvDFilrskrgllVlEVNsspglkgiertt
                   se+ +++AI+ +   g dv+G+D ++  + +  V+E N+++g+  + +  
    KIAA1238   264 SEQGKQLAIQVSNILGMDVCGIDLLMKDDGSFCVCEANANVGFIAFDKAC 313  

                   GiniAkklieyi<-*
                     ++A+ +++y+   
    KIAA1238   314 NLDVAGIIADYA    325  

PF02655.5.ls: domain 1 of 1, from 134 to 294: score -35.2, E = 0.0026
                   *->asDKlktykaLknargvpvPeTyliitkle..........aeeleee
                      + +K+ t+++L ++ gvp P      ++++ +++++  + ++e+e +
    KIAA1238   134    CVNKFWTFQELAGH-GVPLP------DTFSygghenfakmIDEAEVL 173  

                   nekkyivKPrdGaGgegvrfvengeedeefieelenPd......iiQeFI
                    e +++vK+ +G  g++v++++++      + +l+ +++++ + ++Q ++
    KIAA1238   174 -EFPMVVKNTRGHRGKAVFLARDK----HHLADLSHLIrheapyLFQKYV 218  

                   e...GeplSVsllsdgekalpL.svNrQlIdnagleeegsNaeqtdVsgf
                   ++++G+ + V +++ g   ++++++ r   d +  +             +
    KIAA1238   219 KeshGRDVRVIVVG-G---RVVgTMLRCSTDGRMQS-------------N 251  

                   vYaGnltPsetelEvkeeleelAeevveaLpGLrGy..vGVDlvCltdrl
                   +  G++      l   e   +lA++v   L    G++ +G+Dl+ ++d  
    KIAA1238   252 CSLGGVGMMC-SL--SEQGKQLAIQVSNIL----GMdvCGIDLL-MKD-- 291  

                   ggPYViEVNPRiTts<-*
                                +s   
    KIAA1238   292 ------------DGS    294  

PF08443.2.ls: domain 1 of 1, from 134 to 325: score 155.2, E = 1.5e-43
                   *->ArDKvkSlqlLakkgTiKqiPTLIpvPntglafseedaekfIEkikR
                        +K+   q La +g        +p+P t   ++ e   k+I++   
    KIAA1238   134    CVNKFWTFQELAGHG--------VPLPDTFSYGGHENFAKMIDEAE- 171  

                   ClgfPvVvKsvfGsqGigVflaedkqsLeqlleafkqlknaiyeiklvQe
                    l fP VvK+  G  G  Vfla+dk  L  l ++     ++     l+Q 
    KIAA1238   172 VLEFPMVVKNTRGHRGKAVFLARDKHHLADL-SHLIRHEAPY----LFQK 216  

                   FIeeagnDLYrDiRclVVggeVVgAirRvskeGdFRtNlhrGgvaEkldl
                   + +e+ +   rD+R++VVgg VVg++ R s +G   +N+ +Ggv+  ++l
    KIAA1238   217 YVKESHG---RDVRVIVVGGRVVGTMLRCSTDGRMQSNCSLGGVGMMCSL 263  

                   seEeeeiAIkaaeamgldvlGvDFilrskrgllVlEVNsspglkgiertt
                   se+ +++AI+ +   g dv+G+D ++  + +  V+E N+++g+  + +  
    KIAA1238   264 SEQGKQLAIQVSNILGMDVCGIDLLMKDDGSFCVCEANANVGFIAFDKAC 313  

                   GiniAkklieyi<-*
                     ++A+ +++y+   
    KIAA1238   314 NLDVAGIIADYA    325  

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