hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-20565821/chunk_1/iprscan-20080501-20565821.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1228 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00239 197.1 1.6e-54 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00239 1/3 308 410 .. 1 92 [] 62.9 3.9e-14 SM00239 2/3 459 554 .. 1 92 [] 60.4 2.3e-13 SM00239 3/3 724 829 .. 1 92 [] 73.8 2.2e-17 Alignments of top-scoring domains: SM00239: domain 1 of 3, from 308 to 410: score 62.9, E = 3.9e-14 *->tLtvkiisArnLp..............DPYVkvs......kTkvvkk +L+++ i+A++L ++++ ++ ++++DPY +++ +++ +++v+k KIAA1228 308 VLRIHFIEAQDLQgkdtylkglvkgksDPYGIIRvgnqifQSRVIKE 354 tlsgfNPvWnEesetFeFevpp...s.LeieVyDk.....dfiGrvtipp +l +P+WnE +e v ++++++Leie++D++++++df+G + i+ KIAA1228 355 NL---SPKWNE---VYEALVYEhpgQeLEIELFDEdpdkdDFLGSLMID- 397 nnahqhsadglihlsell.ggrh.kl<-* l e++++ +++ KIAA1228 398 -------------LIEVEkERLLdEW 410 SM00239: domain 2 of 3, from 459 to 554: score 60.4, E = 2.3e-13 *->tLtvkiisArnLp.........DPYVkvs......kTkvvkktlsgf +L +++ sArnLp++++ +++++P V +s +++ + +k+ kt+ KIAA1228 459 LLILYLDSARNLPsgkkissnpNPVVQMSvghkaqESKIRYKTN--- 502 NPvWnEesetFeFevpp...s.LeieVyDk...dfiGrvtippnnahqhs PvW+E F+F ++++++++Le+eV D+ + +G + +p KIAA1228 503 EPVWEE---NFTFFIHNpkrQdLEVEVRDEqhqCSLGNLKVP-------- 541 adglihlsell.ggrh.kl<-* ls+ll+++ +++ KIAA1228 542 ------LSQLLtSEDMtVS 554 SM00239: domain 3 of 3, from 724 to 829: score 73.8, E = 2.2e-17 *->tLtvkiisArnLp.......DPYVkvs...........kTkvvkktl +L v ++ +rnL+ + +++DPYV+++ +++++++++kT+v kktl KIAA1228 724 KLIVVVHACRNLIafsedgsDPYVRMYllpdkrrsgrrKTHVSKKTL 770 sgfNPvWnEesetFeFevpp.....s.LeieVyDk........dfiGrvt NPv+++ +F+F+v+ ++ ++++L + V+++++ ++++ ++G+v KIAA1228 771 ---NPVFDQ---SFDFSVSLpevqrRtLDVAVKNSggflskdkGLLGKVL 814 ippnnahqhsadglihlsell.ggrh.kl<-* + l + + +++++ KIAA1228 815 VA--------------LASEElAKGWtQW 829 //