hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-20520441/chunk_1/iprscan-20080501-20520441.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1225 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00369 135.0 7.9e-36 12 SM00228 72.5 5.3e-17 1 SM00364 56.3 3.9e-12 9 SM00365 34.3 1.7e-05 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00365 1/7 45 63 .. 1 22 [] 3.2 3.3e+02 SM00364 1/9 45 64 .. 1 20 [] 4.8 1.5e+02 SM00369 1/12 48 68 .. 1 24 [] 16.3 4.2 SM00364 2/9 68 87 .. 1 20 [] 4.4 1.7e+02 SM00365 2/7 91 113 .. 1 22 [] 7.9 88 SM00364 3/9 91 110 .. 1 20 [] 7.4 68 SM00369 2/12 91 114 .. 1 24 [] 15.2 5.8 SM00369 3/12 137 159 .. 1 24 [] 7.6 49 SM00365 3/7 160 191 .. 1 22 [] 5.3 1.8e+02 SM00369 4/12 160 182 .. 1 24 [] 13.1 11 SM00364 4/9 160 179 .. 1 20 [] 7.3 70 SM00364 5/9 183 202 .. 1 20 [] 9.0 41 SM00369 5/12 183 205 .. 1 24 [] 17.7 1.6 SM00365 4/7 206 227 .. 1 22 [] 3.6 2.9e+02 SM00369 6/12 206 228 .. 1 24 [] 4.5 1.2e+02 SM00369 7/12 229 252 .. 1 24 [] 17.0 2.7 SM00365 5/7 229 251 .. 1 22 [] 12.3 25 SM00364 6/9 252 271 .. 1 20 [] 4.8 1.5e+02 SM00369 8/12 253 274 .. 1 24 [] 3.3 1.6e+02 SM00369 9/12 275 298 .. 1 24 [] 11.4 17 SM00364 7/9 275 294 .. 1 20 [] 8.0 55 SM00369 10/12 321 344 .. 1 24 [] 13.5 9.4 SM00364 8/9 345 363 .. 1 20 [] 1.5 4e+02 SM00369 11/12 345 366 .. 1 24 [] 2.8 1.9e+02 SM00364 9/9 367 386 .. 1 20 [] 9.1 40 SM00365 6/7 367 385 .. 1 22 [] 1.5 5.2e+02 SM00369 12/12 367 389 .. 1 24 [] 12.5 12 SM00365 7/7 390 411 .. 1 22 [] 0.5 7.1e+02 SM00228 1/1 1289 1369 .. 1 80 [] 72.5 5.3e-17 Alignments of top-scoring domains: SM00365: domain 1 of 7, from 45 to 63: score 3.2, E = 3.3e+02 *->LtnLeeLdLsqNkIkkiENLde<-* + LeeL+L N+I E L + KIAA1225 45 EKTLEELYLDANQI---EELPK 63 SM00364: domain 1 of 9, from 45 to 64: score 4.8, E = 1.5e+02 *->PpsLkeLnvsnNrLteLPeL<-* +L+eL+ + N+++eLP KIAA1225 45 EKTLEELYLDANQIEELPKQ 64 SM00369: domain 1 of 12, from 48 to 68: score 16.3, E = 4.2 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L+eL+L+ Nq+++LP ++F++ KIAA1225 48 ---LEELYLDANQIEELPKQLFNC 68 SM00364: domain 2 of 9, from 68 to 87: score 4.4, E = 1.7e+02 *->PpsLkeLnvsnNrLteLPeL<-* +sL +L +N Lt+LP+ KIAA1225 68 CQSLHKLSLPDNDLTTLPAS 87 SM00365: domain 2 of 7, from 91 to 113: score 7.9, E = 88 *->LtnLeeLdLsqNkIkki.ENLde<-* L nL+eLd+s+N+I+ ++EN+ + KIAA1225 91 LINLRELDVSKNGIQEFpENIKN 113 SM00364: domain 3 of 9, from 91 to 110: score 7.4, E = 68 *->PpsLkeLnvsnNrLteLPeL<-* +L+eL+vs N + e+Pe+ KIAA1225 91 LINLRELDVSKNGIQEFPEN 110 SM00369: domain 2 of 12, from 91 to 114: score 15.2, E = 5.8 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L nLreLd s N +++ P+++ ++ KIAA1225 91 LINLRELDVSKNGIQEFPENIKNC 114 SM00369: domain 3 of 12, from 137 to 159: score 7.6, E = 49 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L nL+ L+L++ L+ LP++ F+ KIAA1225 137 LLNLTQLYLNDAFLEFLPAN-FGR 159 SM00365: domain 3 of 7, from 160 to 191: score 5.3, E = 1.8e+02 *->LtnLeeLdLsqNkI..........kkiENLde<-* Lt+L++L+L+ N+++ +++ ++ +++E Ld KIAA1225 160 LTKLQILELRENQLkmlpktmnrlTQLERLDL 191 SM00369: domain 4 of 12, from 160 to 182: score 13.1, E = 11 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L++L+ L L NqL+ LP + + KIAA1225 160 LTKLQILELRENQLKMLPKTM-NR 182 SM00364: domain 4 of 9, from 160 to 179: score 7.3, E = 70 *->PpsLkeLnvsnNrLteLPeL<-* +L++L ++N+L+ LP KIAA1225 160 LTKLQILELRENQLKMLPKT 179 SM00364: domain 5 of 9, from 183 to 202: score 9.0, E = 41 *->PpsLkeLnvsnNrLteLPeL<-* +L++L+ ++N+ te Pe KIAA1225 183 LTQLERLDLGSNEFTEVPEV 202 SM00369: domain 5 of 12, from 183 to 205: score 17.7, E = 1.6 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L++L++LdL++N +t++P ++++ KIAA1225 183 LTQLERLDLGSNEFTEVP-EVLEQ 205 SM00365: domain 4 of 7, from 206 to 227: score 3.6, E = 2.9e+02 *->LtnLeeLdLsqNkIkkiENLde<-* L+ L+e+++ N+++ i + + KIAA1225 206 LSGLKEFWMDANRLTFIPGFIG 227 SM00369: domain 6 of 12, from 206 to 228: score 4.5, E = 1.2e+02 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L+ L+e + N+Lt +P g ++ KIAA1225 206 LSGLKEFWMDANRLTFIP-GFIGS 228 SM00369: domain 7 of 12, from 229 to 252: score 17.0, E = 2.7 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L +L+ Ld s N+++ + +g+ + KIAA1225 229 LKQLTYLDVSKNNIEMVEEGISTC 252 SM00365: domain 5 of 7, from 229 to 251: score 12.3, E = 25 *->LtnLeeLdLsqNkIkki.ENLde<-* L++L++Ld+s+N I+ ++E++++ KIAA1225 229 LKQLTYLDVSKNNIEMVeEGIST 251 SM00364: domain 6 of 9, from 252 to 271: score 4.8, E = 1.5e+02 *->PpsLkeLnvsnNrLteLPeL<-* ++L+ L s+N+L LPe KIAA1225 252 CENLQDLLLSSNSLQQLPET 271 SM00369: domain 8 of 12, from 253 to 274: score 3.3, E = 1.6e+02 *->LpnLreLdLsnNqLtsLPpgaFqg<-* nL+ L Ls+N L++LP+ + ++ KIAA1225 253 -ENLQDLLLSSNSLQQLPETI-GS 274 SM00369: domain 9 of 12, from 275 to 298: score 11.4, E = 17 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L n ++L + NqL LP+ + + KIAA1225 275 LKNITTLKIDENQLMYLPDSIGGL 298 SM00364: domain 7 of 9, from 275 to 294: score 8.0, E = 55 *->PpsLkeLnvsnNrLteLPeL<-* ++++L +++N+L LP+ KIAA1225 275 LKNITTLKIDENQLMYLPDS 294 SM00369: domain 10 of 12, from 321 to 344: score 13.5, E = 9.4 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L+nLr+ ++N L++LPp++ + KIAA1225 321 LTNLRTFAADHNYLQQLPPEIGSW 344 SM00364: domain 8 of 9, from 345 to 363: score 1.5, E = 4e+02 *->PpsLkeLnvsnNrLteLPeL<-* +++ L+ +N+L++LPe KIAA1225 345 -KNITVLFLHSNKLETLPEE 363 SM00369: domain 11 of 12, from 345 to 366: score 2.8, E = 1.9e+02 *->LpnLreLdLsnNqLtsLPpgaFqg<-* n ++L L++N+L++LP+++ ++ KIAA1225 345 -KNITVLFLHSNKLETLPEEM-GD 366 SM00364: domain 9 of 9, from 367 to 386: score 9.1, E = 40 *->PpsLkeLnvsnNrLteLPeL<-* ++Lk +n s+NrL++LP KIAA1225 367 MQKLKVINLSDNRLKNLPFS 386 SM00365: domain 6 of 7, from 367 to 385: score 1.5, E = 5.2e+02 *->LtnLeeLdLsqNkIkkiENLde<-* +++L+++ Ls+N++ NL KIAA1225 367 MQKLKVINLSDNRL---KNLPF 385 SM00369: domain 12 of 12, from 367 to 389: score 12.5, E = 12 *->LpnLreLdLsnNqLtsLPpgaFqg<-* + +L++ +Ls+N+L+ LP F KIAA1225 367 MQKLKVINLSDNRLKNLP-FSFTK 389 SM00365: domain 7 of 7, from 390 to 411: score 0.5, E = 7.1e+02 *->LtnLeeLdLsqNkIkkiENLde<-* L++L+ +Ls+N+ k + L + KIAA1225 390 LQQLTAMWLSDNQSKPLIPLQK 411 SM00228: domain 1 of 1, from 1289 to 1369: score 72.5, E = 5.3e-17 *->gglGfsivg..............gifvssvvpGspAakaGrkslglL + lGfsi+g+ ++++++ +++++gifv++v+p +pA+k L KIAA1225 1289 PELGFSISGgvggrgnpfrpdddGIFVTRVQPEGPASKL-------L 1328 kvGDvIleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-* ++GD+I++ NG s + h +av llk ++ +v+L+++R+ KIAA1225 1329 QPGDKIIQANG-YSFINIEHGQAVSLLKTFQN-----TVELIIVREV 1369 //