hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-20333049/chunk_1/iprscan-20080501-20333049.nocrc
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Query sequence: KIAA1215
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF06638.2.ls Strabismus protein                          1264.6          0   1
PF06638.2.fs Strabismus protein                          1263.0          0   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF06638.2.fs   1/1      77   575 .]     1   559 []  1263.0        0
PF06638.2.ls   1/1      77   575 .]     1   559 []  1264.6        0

Alignments of top-scoring domains:
PF06638.2.fs: domain 1 of 1, from 77 to 575: score 1263.0, E = 0
                   *->HrerlReRHrsksresskrgdksvtiqappGePlldneStraedGQe
                      Hr+r R+RHrsksr ++ rgdksvtiqap GePlldneStr+++   
    KIAA1215    77    HRDR-RDRHRSKSR-DGGRGDKSVTIQAP-GEPLLDNESTRGDE--- 117  

                   vievkIlpqDenWGEnTTvvTGmTSEhsiseEditriytkeiedsigldC
                           +D+nWGE+TTvvTG TSEhsis++d+tri  k++eds++ldC
    KIAA1215   118 --------RDDNWGETTTVVTG-TSEHSISHDDLTRI-AKDMEDSVPLDC 157  

                   rRfvgllvsslLgllsflsPiamCsLPillPqigffPsafdhPeitqtvr
                   +R++g+ ++  L+llsfl+P+a+    +llP++++              r
    KIAA1215   158 SRHLGVAAGATLALLSFLTPLAF----LLLPPLLW--------------R 189  

                   dqLeqCgtdCeGLlvslAfKLLlLlIgiWaLFfRkarAdmPRvFvfRALL
                   ++Le+Cgt+CeGL++s+AfKLL+Ll+g+WaLFfR+++A +PRvFv RALL
    KIAA1215   190 EELEPCGTACEGLFISVAFKLLILLLGSWALFFRRPKASLPRVFVLRALL 239  

                   lvLVflivfaYWLFYiVRileeRdivvetGGdarnYkgIVgYAvSLVDAL
                   +vLVfl+v++YWLFY+VRil+ R+         r Y+g+V++AvSLVDAL
    KIAA1215   240 MVLVFLLVVSYWLFYGVRILDARE---------RSYQGVVQFAVSLVDAL 280  

                   LFiHYLAVVLLELRhLqPqFiikiVRspDGesRfYniGhLSIQrAAvwvL
                   LF+HYLAVVLLELR+LqPqF++k+VRs+DG+sRfYn+GhLSIQr+Avw+L
    KIAA1215   281 LFVHYLAVVLLELRQLQPQFTLKVVRSTDGASRFYNVGHLSIQRVAVWIL 330  

                   ehYytdFpifNpaLlnapksilakqsgkiGGmaGFKvYnveefggsenns
                   e Yy+dFp++NpaLln+pks+lak+       +GFKvY+++e ++s+nns
    KIAA1215   331 EKYYHDFPVYNPALLNLPKSVLAKK------VSGFKVYSLGE-ENSTNNS 373  

                   tgqSRAviaAAARRRdsSHnEvyYEEaEfERRVKKRKaRLivAvEEAFtH
                   tgqSRAviaAAARRRd+SHnE+yYEEaE+ERRV+KR+aRL+vAvEEAFtH
    KIAA1215   374 TGQSRAVIAAAARRRDNSHNEYYYEEAEHERRVRKRRARLVVAVEEAFTH 423  

                   IkrlqdeeatnqkkaprevmDPreAAqAvFpsmaRALqKYLRtTRqQprH
                   Ikrlq+ee    +k+prevmDPreAAqA+F+smaRA+qKYLRtT+qQp+H
    KIAA1215   424 IKRLQEEE----QKNPREVMDPREAAQAIFASMARAMQKYLRTTKQQPYH 469  

                   tmEsIlkHLefClthdlsPrAFLeRYLsdgptmQyqkervlesqWsLisd
                   tmEsIl+HLefC+thd++P+AFLeRYL +gpt+Qy+ker+l++qW+L+s+
    KIAA1215   470 TMESILQHLEFCITHDMTPKAFLERYLAAGPTIQYHKERWLAKQWTLVSE 519  

                   EaVssglrdGvvfvLkrlDPDiDCGvsLVVtvkkiPFfnLsEefvdPKsh
                   E+V++gl+dG+vf Lkr+D      +sLVV++kk+PFf+LsEefvdPKsh
    KIAA1215   520 EPVTNGLKDGIVFLLKRQD------FSLVVSTKKVPFFKLSEEFVDPKSH 563  

                   KFvLkLqsETSV<-*
                   KFv++LqsETSV   
    KIAA1215   564 KFVMRLQSETSV    575  

PF06638.2.ls: domain 1 of 1, from 77 to 575: score 1264.6, E = 0
                   *->HrerlReRHrsksresskrgdksvtiqappGePlldneStraedGQe
                      Hr+r R+RHrsksr ++ rgdksvtiqap GePlldneStr+++   
    KIAA1215    77    HRDR-RDRHRSKSR-DGGRGDKSVTIQAP-GEPLLDNESTRGDE--- 117  

                   vievkIlpqDenWGEnTTvvTGmTSEhsiseEditriytkeiedsigldC
                           +D+nWGE+TTvvTG TSEhsis++d+tri  k++eds++ldC
    KIAA1215   118 --------RDDNWGETTTVVTG-TSEHSISHDDLTRI-AKDMEDSVPLDC 157  

                   rRfvgllvsslLgllsflsPiamCsLPillPqigffPsafdhPeitqtvr
                   +R++g+ ++  L+llsfl+P+a+    +llP++++              r
    KIAA1215   158 SRHLGVAAGATLALLSFLTPLAF----LLLPPLLW--------------R 189  

                   dqLeqCgtdCeGLlvslAfKLLlLlIgiWaLFfRkarAdmPRvFvfRALL
                   ++Le+Cgt+CeGL++s+AfKLL+Ll+g+WaLFfR+++A +PRvFv RALL
    KIAA1215   190 EELEPCGTACEGLFISVAFKLLILLLGSWALFFRRPKASLPRVFVLRALL 239  

                   lvLVflivfaYWLFYiVRileeRdivvetGGdarnYkgIVgYAvSLVDAL
                   +vLVfl+v++YWLFY+VRil+ R+         r Y+g+V++AvSLVDAL
    KIAA1215   240 MVLVFLLVVSYWLFYGVRILDARE---------RSYQGVVQFAVSLVDAL 280  

                   LFiHYLAVVLLELRhLqPqFiikiVRspDGesRfYniGhLSIQrAAvwvL
                   LF+HYLAVVLLELR+LqPqF++k+VRs+DG+sRfYn+GhLSIQr+Avw+L
    KIAA1215   281 LFVHYLAVVLLELRQLQPQFTLKVVRSTDGASRFYNVGHLSIQRVAVWIL 330  

                   ehYytdFpifNpaLlnapksilakqsgkiGGmaGFKvYnveefggsenns
                   e Yy+dFp++NpaLln+pks+lak+       +GFKvY+++e ++s+nns
    KIAA1215   331 EKYYHDFPVYNPALLNLPKSVLAKK------VSGFKVYSLGE-ENSTNNS 373  

                   tgqSRAviaAAARRRdsSHnEvyYEEaEfERRVKKRKaRLivAvEEAFtH
                   tgqSRAviaAAARRRd+SHnE+yYEEaE+ERRV+KR+aRL+vAvEEAFtH
    KIAA1215   374 TGQSRAVIAAAARRRDNSHNEYYYEEAEHERRVRKRRARLVVAVEEAFTH 423  

                   IkrlqdeeatnqkkaprevmDPreAAqAvFpsmaRALqKYLRtTRqQprH
                   Ikrlq+ee    +k+prevmDPreAAqA+F+smaRA+qKYLRtT+qQp+H
    KIAA1215   424 IKRLQEEE----QKNPREVMDPREAAQAIFASMARAMQKYLRTTKQQPYH 469  

                   tmEsIlkHLefClthdlsPrAFLeRYLsdgptmQyqkervlesqWsLisd
                   tmEsIl+HLefC+thd++P+AFLeRYL +gpt+Qy+ker+l++qW+L+s+
    KIAA1215   470 TMESILQHLEFCITHDMTPKAFLERYLAAGPTIQYHKERWLAKQWTLVSE 519  

                   EaVssglrdGvvfvLkrlDPDiDCGvsLVVtvkkiPFfnLsEefvdPKsh
                   E+V++gl+dG+vf Lkr+D      +sLVV++kk+PFf+LsEefvdPKsh
    KIAA1215   520 EPVTNGLKDGIVFLLKRQD------FSLVVSTKKVPFFKLSEEFVDPKSH 563  

                   KFvLkLqsETSV<-*
                   KFv++LqsETSV   
    KIAA1215   564 KFVMRLQSETSV    575  

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