hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-20314848/chunk_1/iprscan-20080501-20314848.nocrc
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Query sequence: KIAA1214
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02225.12.fs PA domain                                       64.0    1.6e-18   1
PF02225.12.ls PA domain                                       66.0    1.1e-16   1
PF00097.15.fs Zinc finger, C3HC4 type (RING finger)           43.3    9.2e-15   1
PF00097.15.ls Zinc finger, C3HC4 type (RING finger)           45.1    2.2e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02225.12.fs   1/1     147   249 ..     1   111 []    64.0  1.6e-18
PF02225.12.ls   1/1     147   249 ..     1   111 []    66.0  1.1e-16
PF00097.15.fs   1/1     302   342 ..     1    50 []    43.3  9.2e-15
PF00097.15.ls   1/1     302   342 ..     1    50 []    45.1  2.2e-10

Alignments of top-scoring domains:
PF02225.12.fs: domain 1 of 1, from 147 to 249: score 64.0, E = 1.6e-18
                   *->sp.ggktgpLVyagdgsnsdfsaCesrpgsldpkdvkGKIVLcdrGg
                      sp++ ++g++V a ++ ++   aC++ +++  p + k++I+L+  G+
    KIAA1214   147    SPkQDARGEVVMASSAHDRL--ACDPNTKFAAPTRGKNWIALIPKGN 191  

                   csfaeKaanAqaAGAaGvIiynnpddglevmapetdsndkkdpdshgiPa
                   c++++K++nA   +A++v+i+n  ++ +e+++       + ++ + +i a
    KIAA1214   192 CTYRDKIRNAFLQNASAVVIFNVGSNTNETIT-------MPHAGVEDIVA 234  

                   vfvskedGeallsyi<-*
                   +++++  G+++ s +   
    KIAA1214   235 IMIPEPKGKEIVSLL    249  

PF02225.12.ls: domain 1 of 1, from 147 to 249: score 66.0, E = 1.1e-16
                   *->sp.ggktgpLVyagdgsnsdfsaCesrpgsldpkdvkGKIVLcdrGg
                      sp++ ++g++V a ++ ++   aC++ +++  p + k++I+L+  G+
    KIAA1214   147    SPkQDARGEVVMASSAHDRL--ACDPNTKFAAPTRGKNWIALIPKGN 191  

                   csfaeKaanAqaAGAaGvIiynnpddglevmapetdsndkkdpdshgiPa
                   c++++K++nA   +A++v+i+n  ++ +e+++       + ++ + +i a
    KIAA1214   192 CTYRDKIRNAFLQNASAVVIFNVGSNTNETIT-------MPHAGVEDIVA 234  

                   vfvskedGeallsyi<-*
                   +++++  G+++ s +   
    KIAA1214   235 IMIPEPKGKEIVSLL    249  

PF00097.15.fs: domain 1 of 1, from 302 to 342: score 43.3, E = 9.2e-15
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C++C e++k++   +  ilpC+H      f++sC+  wl     +tC
    KIAA1214   302    CAVCIEGYKPND--VVRILPCRHL-----FHKSCVDPWLL--DHRTC 339  

                   plC<-*
                   p+C   
    KIAA1214   340 PMC    342  

PF00097.15.ls: domain 1 of 1, from 302 to 342: score 45.1, E = 2.2e-10
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C++C e++k++   +  ilpC+H      f++sC+  wl     +tC
    KIAA1214   302    CAVCIEGYKPND--VVRILPCRHL-----FHKSCVDPWLL--DHRTC 339  

                   plC<-*
                   p+C   
    KIAA1214   340 PMC    342  

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