# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh01431.fasta.huge -Q ../query/KIAA1214.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1214, 462 aa vs ./tmplib.24314 library 1987043 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 5.1495+/-0.00517; mu= 15.7997+/- 0.353 mean_var=146.2692+/-34.258, 0's: 0 Z-trim: 8 B-trim: 0 in 0/40 Lambda= 0.106047 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1133 ( 891 res) hg03758b ( 891) 264 52.1 1.7e-07 KIAA1100 ( 444 res) hk07907 ( 444) 219 44.8 1.4e-05 KIAA0675 ( 1217 res) hk02566 (1217) 196 41.9 0.00028 KIAA0438 ( 726 res) hj00450 ( 726) 188 40.3 0.00049 KIAA1810 ( 579 res) fk03376 ( 579) 184 39.6 0.00066 >>KIAA1133 ( 891 res) hg03758b (891 aa) initn: 296 init1: 247 opt: 264 Z-score: 226.3 bits: 52.1 E(): 1.7e-07 Smith-Waterman score: 298; 26.129% identity (50.323% similar) in 310 aa overlap (107-360:13-305) 80 90 100 110 120 130 KIAA12 SLALSTWLLSFCFVHLLCLDFTVAEKEEWYTAFVNITYAEPAPDPGAGAAGGGGAELHTE ::::... : .:. : .: KIAA11 AAAGPGAARAKETAFVEVVLFESSPS--------GDYTTYTT 10 20 30 140 150 160 170 180 KIAA12 KTECGRYGEHSPKQDARGEVVMASSAHDRLACDPNTKFAAPTRGKNWIALI--------P ::... . .:.::.:. : :. : . : :.... : KIAA11 GLT-GRFSRAGATLSAEGEIVQ---MHPLGLCNNNDEEDLYEYG--WVGVVKLEQPELDP 40 50 60 70 80 190 200 210 220 230 240 KIAA12 KGNCTYRDKIRNAFLQNASAVVIFNVGSNTNETITMPHAGVEDIVAIMIPEPKGKEIVSL : : : . : ..:.:: ::.:. : :.: . . : :: . . :: . ..: KIAA11 KPCLTVLGKAKRAVQRGATAV-IFDVSENP-EAIDQLNQGSEDPLKRPVVYVKGADAIKL 90 100 110 120 130 140 250 260 270 KIAA12 L-------------------------ERNITVTMYITIGTRNL-------QKYRR----L . . .: ........ : : :: . KIAA11 MNIVNKQKVARARIQHRPPRQPTEYFDMGIFLAFFVVVSLVCLILLVKIKLKQRRSQNSM 150 160 170 180 190 200 280 290 300 310 320 KIAA12 GDAAKKAISKLQIRTIK---KGDKE---------TESDFDNCAVCIEGYKPNDVVRILPC . : .:. :.. : .. :: .: . :. ..::.:.: : .. .:..:: KIAA11 NRLAVQALEKMETRKFNSKSKGRREGSCGALDTLSSSSTSDCAICLEKYIDGEELRVIPC 210 220 230 240 250 260 330 340 350 360 370 380 KIAA12 RHLFHKSCVDPWLLDHRTCPMCKMNILKALGIPPNADCMDDLPTDFEGSLGGPPTNQITG : ::..:::::::.:.::: :. ::.. : :.: :.. KIAA11 THRFHRKCVDPWLLQHHTCPHCRHNIIEQKG-NPSAVCVETSNLSRGRQQRVTLPVHYPG 270 280 290 300 310 320 390 400 410 420 430 440 KIAA12 ASDTTVNESSVTLDPAVRTVGALQVVQDTDPIPQEGDVIFTTNSEQEPAVSSDSDISLIM KIAA11 RVHRTNAIPAYPTRTSMDSHGNPVTLLTMDRHGEQSLYSPQTPAYIRSYPPLHLDHSLAA 330 340 350 360 370 380 >>KIAA1100 ( 444 res) hk07907 (444 aa) initn: 281 init1: 178 opt: 219 Z-score: 192.1 bits: 44.8 E(): 1.4e-05 Smith-Waterman score: 219; 34.444% identity (63.333% similar) in 90 aa overlap (271-357:358-444) 250 260 270 280 290 KIAA12 KGKEIVSLLERNITVTMYITIGTRNLQKYRRLGDAAKKAISKL---QIRTIKKGDKETES ::::: ....: :. . . . .: KIAA11 PTAMGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQS 330 340 350 360 370 380 300 310 320 330 340 350 KIAA12 DFDNCAVCIEGYKPNDVVRILPCRHLFHKSCVDPWLLDHRTCPMCKMNILKALGIPPNAD . :.::. .. ...:.::: : :: .::: :: .::::.:. . : .: .:. KIAA11 EQTLCVVCFSDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPICRAD---ASEVPREAE 390 400 410 420 430 440 360 370 380 390 400 410 KIAA12 CMDDLPTDFEGSLGGPPTNQITGASDTTVNESSVTLDPAVRTVGALQVVQDTDPIPQEGD >>KIAA0675 ( 1217 res) hk02566 (1217 aa) initn: 185 init1: 152 opt: 196 Z-score: 168.7 bits: 41.9 E(): 0.00028 Smith-Waterman score: 196; 38.889% identity (74.074% similar) in 54 aa overlap (294-347:1149-1201) 270 280 290 300 310 320 KIAA12 RNLQKYRRLGDAAKKAISKLQIRTIKKGDKETESDFDNCAVCIEGYKPNDVVRILPCRHL : : . . :..: :. .:... .::: : KIAA06 QPDAAQPPKPAWRPLTSQGPATWEGASNPDEEEEEEEPCVICHENLSPENL-SVLPCAHK 1120 1130 1140 1150 1160 1170 330 340 350 360 370 380 KIAA12 FHKSCVDPWLLDHRTCPMCKMNILKALGIPPNADCMDDLPTDFEGSLGGPPTNQITGASD :: .:. :::... ::: :....: KIAA06 FHAQCIRPWLMQQGTCPTCRLHVLLPEEFPGHPSRQLPKI 1180 1190 1200 1210 >>KIAA0438 ( 726 res) hj00450 (726 aa) initn: 160 init1: 135 opt: 188 Z-score: 164.3 bits: 40.3 E(): 0.00049 Smith-Waterman score: 188; 31.373% identity (59.804% similar) in 102 aa overlap (275-376:626-719) 250 260 270 280 290 300 KIAA12 IVSLLERNITVTMYITIGTRNLQKYRRLGDAAKKAISKLQIRTIKKGDKETESDFDNCAV :.:..:. : .:. :. . .. . : . KIAA04 ALEERLAQAMETALAHLESLAVDVEVANPPASKESIDGLP-ETLVLEDHTAIGQEQCCPI 600 610 620 630 640 650 310 320 330 340 350 360 KIAA12 CIEGYKPNDVVRILPCRHLFHKSCVDPWLLDHRTCPMCKMNILKALGIPPNADCMDDLPT : : .:.. :::.:.::: ::. :: :::.:. .. :: . . :. KIAA04 CCSEYIKDDIATELPCHHFFHKPCVSIWLQKSGTCPVCRRHF------PPAVIEASAAPS 660 670 680 690 700 370 380 390 400 410 420 KIAA12 DFEGSLGGPPTNQITGASDTTVNESSVTLDPAVRTVGALQVVQDTDPIPQEGDVIFTTNS . : . .::.: KIAA04 S-EPDPDAPPSNDSIAEAP 710 720 >>KIAA1810 ( 579 res) fk03376 (579 aa) initn: 155 init1: 155 opt: 184 Z-score: 162.0 bits: 39.6 E(): 0.00066 Smith-Waterman score: 184; 28.571% identity (58.824% similar) in 119 aa overlap (257-374:211-317) 230 240 250 260 270 280 KIAA12 AGVEDIVAIMIPEPKGKEIVSLLERNITVTMYITIGTRNLQKYRRLGDAAKKAISKLQIR ::... :...: . ...:: ... KIAA18 FTGFIKVLLYMAFMTIMIKVHTFPLFAIRPMYLAM--RQFKKAVTDAIMSRRAIRNMNTL 190 200 210 220 230 290 300 310 320 330 340 KIAA12 TIKKGDKETESDFDN-CAVCIEGYKPNDVVRILPCRHLFHKSCVDPWLLDHRTCPMCKMN .: .. .:: : .: : . . .. ::: :.:: ::. :. ..::: :.:. KIAA18 YPDATPEELQA-MDNVCIICREEMVTG--AKRLPCNHIFHTSCLRSWFQRQQTCPTCRMD 240 250 260 270 280 290 350 360 370 380 390 400 KIAA12 ILKALGIPPNADCMDDLPTDFEGSLGGPPTNQITGASDTTVNESSVTLDPAVRTVGALQV .:.: ..: .. : : . ::: KIAA18 VLRA-SLPAQS------PPPPEPADQGPPPAPHPPPLLPQPPNFPQGLLPPFPPGMFPLW 300 310 320 330 340 462 residues in 1 query sequences 1987043 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:13:24 2008 done: Thu Dec 18 15:13:24 2008 Total Scan time: 0.420 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]