hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-20133214/chunk_1/iprscan-20080501-20133214.nocrc
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Query sequence: KIAA1203
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00443.19.fs Ubiquitin carboxyl-terminal hydrolase          122.5    1.8e-39   1
PF00443.19.ls Ubiquitin carboxyl-terminal hydrolase           13.6    2.3e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00443.19.ls   1/1       2   137 ..     1   318 []    13.6  2.3e-07
PF00443.19.fs   1/1       6   137 ..   163   318 .]   122.5  1.8e-39

Alignments of top-scoring domains:
PF00443.19.ls: domain 1 of 1, from 2 to 137: score 13.6, E = 2.3e-07
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->pgptGLvNlGNTCYmNSvLQcLfsipplrdyflsdsyeseinesnpl
                      +g +                                           
    KIAA1203     2    QGSI------------------------------------------- 5    

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   gskgsllcaladLfnalqsgyksvapsplkflkqfkltlgkineefsgym
                                                                     
    KIAA1203     - -------------------------------------------------- -    

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   QQDAhEFllfLLdgLhedlnrvnkkpytepessdkrpdkaaeawknhltr
                                                                     
    KIAA1203     - -------------------------------------------------- -    

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   nesiitdlFqGqlksklkikrLPpvLiihLKRFsyngetglnkKiddkVe
                                  +l++++LP+vLiihLKRF  +g+  ++ K+ + V+
    KIAA1203     6 ---------------TLSLWTLPDVLIIHLKRFRQEGD--RRMKLQNMVK 38   

                RF xxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxx             
                   fPleLdlssycnaelkekevlrkdek.ieklkeerqr.............
                   fPl+ +++                +++  k+++++ + +++ ++ +++ +
    KIAA1203    39 FPLTGLDM----------------TPhVVKRSQSSWSlpshwspwrrpyg 72   

                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   ...dedgnneeepeeeedneegenpptkYeLyaVvvHsGsslssGHYiay
                    ++d                   + +++Y+LyaV +H+G ++++GHY+ay
    KIAA1203    73 lgrD-------------------PEDYIYDLYAVCNHHG-TMQGGHYTAY 102  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx   
                   ikkkkengkWykfDDekVsevteeevlersssAYiLFY<-*
                   +k ++ +g Wy+fDD+ V++ +e+ev   +++AYiLFY   
    KIAA1203   103 CK-NSVDGLWYCFDDSDVQQLSEDEV--CTQTAYILFY    137  

PF00443.19.fs: domain 1 of 1, from 6 to 137: score 122.5, E = 1.8e-39
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->klkikrLPpvLiihLKRFsyngetglnkKiddkVefPleLdlssycn
                      +l++++LP+vLiihLKRF  +g+  ++ K+ + V+fPl+ +++    
    KIAA1203     6    TLSLWTLPDVLIIHLKRFRQEGD--RRMKLQNMVKFPLTGLDM---- 46   

                RF xxxxxxxxxxxxxx xxxxxxxxxx                xxxxxxxxx
                   aelkekevlrkdek.ieklkeerqr................dedgnneee
                               +++  k+++++ + +++ ++ +++ + ++d        
    KIAA1203    47 ------------TPhVVKRSQSSWSlpshwspwrrpyglgrD-------- 76   

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   peeeedneegenpptkYeLyaVvvHsGsslssGHYiayikkkkengkWyk
                              + +++Y+LyaV +H+G ++++GHY+ay+k ++ +g Wy+
    KIAA1203    77 -----------PEDYIYDLYAVCNHHG-TMQGGHYTAYCK-NSVDGLWYC 113  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxx   
                   fDDekVsevteeevlersssAYiLFY<-*
                   fDD+ V++ +e+ev   +++AYiLFY   
    KIAA1203   114 FDDSDVQQLSEDEV--CTQTAYILFY    137  

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