hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-20002326/chunk_1/iprscan-20080501-20002326.nocrc
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Query sequence: KIAA1195
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00646.23.fs F-box domain                                    26.3    5.7e-06   1
PF00646.23.ls F-box domain                                    28.3    2.5e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00646.23.fs   1/1     579   626 ..     1    46 []    26.3  5.7e-06
PF00646.23.ls   1/1     579   626 ..     1    46 []    28.3  2.5e-05

Alignments of top-scoring domains:
PF00646.23.fs: domain 1 of 1, from 579 to 626: score 26.3, E = 5.7e-06
                   *->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwk.kl
                       sl +LP+e+l+ I  +Ld  +l +ls+VS  +r+++ +l   ++ +
    KIAA1195   579    NSLTSLPLEILKYIAGFLDSVSLAQLSQVSVLMRNICATLlQERgMV 625  

                   l<-*
                   l   
    KIAA1195   626 L    626  

PF00646.23.ls: domain 1 of 1, from 579 to 626: score 28.3, E = 2.5e-05
                   *->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwk.kl
                       sl +LP+e+l+ I  +Ld  +l +ls+VS  +r+++ +l   ++ +
    KIAA1195   579    NSLTSLPLEILKYIAGFLDSVSLAQLSQVSVLMRNICATLlQERgMV 625  

                   l<-*
                   l   
    KIAA1195   626 L    626  

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