# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fg00739.fasta.huge -Q ../query/KIAA1193.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
KIAA1193, 544 aa
vs ./tmplib.24314 library
1986961 residues in 2037 sequences
Expectation_n fit: rho(ln(x))= 7.6430+/-0.00672; mu= 3.9620+/- 0.454
mean_var=226.1006+/-55.074, 0's: 0 Z-trim: 8 B-trim: 137 in 1/39
Lambda= 0.085295
FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 37, opt: 25, open/ext: -10/-2, width: 16
The best scores are: opt bits E(2037)
KIAA1610 ( 484 res) fj11544 ( 484) 983 133.5 3.5e-32
KIAA0458 ( 1552 res) ef01252 (1552) 210 39.0 0.0032
>>KIAA1610 ( 484 res) fj11544 (484 aa)
initn: 936 init1: 717 opt: 983 Z-score: 669.7 bits: 133.5 E(): 3.5e-32
Smith-Waterman score: 983; 44.557% identity (67.848% similar) in 395 aa overlap (41-419:3-381)
20 30 40 50 60 70
KIAA11 PRVVSCLEHSLCPGEPGLQTTAVVSMGSGDHQFNLAEILSQNYSVRGECEEASRCPDKPK
:.:. . : .. ..:: . .:. : .
KIAA16 LVHDFDDERTLEEEEMMEGETNFSSEIEDLAR
10 20 30
80 90 100 110 120
KIAA11 EELEKDFISQSNDMPFDELLALYGY-------EASDPISDRESEGGDVAPNLPDMTL---
: .:::. :::.:::: : .. ..: :: : : .
KIAA16 E----------GDMPIHELLSLYGYGSTVRLPEEDEEEEEEEEEGEDDEDADNDDNSGCS
40 50 60 70 80
130 140 150 160 170
KIAA11 --DKEQIAKDLLSGEEEEETQSSADDLTPSVTSHEASDLFPNRSGSRFLADEDREPGSSA
.::. :: :. .:.::::: :: . ::.:..:.... : . : .. . :
KIAA16 GENKEENIKD--SSGQEDETQSSNDDPSQSVASQDAQEIIRPRRCKYFDTNSEVEE----
90 100 110 120 130
180 190 200 210 220 230
KIAA11 SSDTEEDSLPANKCKKEIMVGPQFQADLS-NLHLNRHCEKIYENEDQLLWDPSVLPEREV
:. .:: .:.. ::::::: .:::.. .. .. ::.:::.::::::: ::: .:
KIAA16 ESEEDEDYIPSEDWKKEIMVGSMFQAEIPVGICRYKENEKVYENDDQLLWDPEYLPEDKV
140 150 160 170 180 190
240 250 260 270 280 290
KIAA11 EEFLYRAVKRRWHEMAGPQLPEGEAVKDSEQALYELVKCNFNVEEALRRLRFNVKVIRDG
:: : .: : . .::: .::.::::::::::::..::::::::::::. :.
KIAA16 IIFLKDASRRTGDEKGVEAIPEGSHIKDNEQALYELVKCNFDTEEALRRLRFNVKAAREE
200 210 220 230 240 250
300 310 320 330 340 350
KIAA11 LCAWSEEECRNFEHGFRVHGKNFHLIQANKVRTRSVGECVEYYYLWKKSERYDYFAQQTR
: .:.::::::::.:....::.:::::::::::::::::: .::.::::::::.::::::
KIAA16 LSVWTEEECRNFEQGLKAYGKDFHLIQANKVRTRSVGECVAFYYMWKKSERYDFFAQQTR
260 270 280 290 300 310
360 370 380 390 400 410
KIAA11 LGRRKY-VPSGTTD-ADQDLDGSDPDGPGR-PRPEQDTLTGMRTDPLSVDGTAGGLDEPG
.:..:: . :.:: :. :: :. . .: : : . .. .. . :::.. .. :
KIAA16 FGKKKYNLHPGVTDYMDRLLDESESAASSRAPSPPPTASNSSNSQSEKEDGTVSTANQNG
320 330 340 350 360 370
420 430 440 450 460 470
KIAA11 VASDGLPSSEPGPCSFQQLDESPAVPLSHRPPALADPASYQPAVTAPEPDASPRLAVDFA
:.:.:
KIAA16 VSSNGPGEILNKEEVKVEGLHINGPTGGNKKPLHADMDTNGYETDNLTTDPKLAHMTARN
380 390 400 410 420 430
>>KIAA0458 ( 1552 res) ef01252 (1552 aa)
initn: 203 init1: 90 opt: 210 Z-score: 149.7 bits: 39.0 E(): 0.0032
Smith-Waterman score: 210; 27.315% identity (55.093% similar) in 216 aa overlap (190-393:266-469)
160 170 180 190 200 210
KIAA11 NRSGSRFLADEDREPGSSASSDTEEDSLPANKCKKEIMVGPQFQADLSNLHL--NRHCEK
:. . :: :::. :: : .:. . .
KIAA04 FSDIFAAREFKARVDSFFYILGYNPETRRLNSTQGEIRVGPSHQAKLPDLQPFPSPDGDT
240 250 260 270 280 290
220 230 240 250 260
KIAA11 IYENEDQLLWDPSVLPEREVEEFLYRAVKRRWHEMAG----PQLPEG--EAVKDSE--QA
. ..:. :.: :.: . . ..: . : .:: . .: : .:. .:
KIAA04 VTQHEE-LVWMPGV---NDCDLLMYLRAARSMAAFAGMCDGGSTEDGCVAASRDDTTLNA
300 310 320 330 340 350
270 280 290 300 310 320
KIAA11 LYELVKCNFNVEEALRRL--RFNVKVIRDGLCAWSEEECRNFEHGFRVHGKNFHLIQANK
: : . .... .::.:: . :.:. : :.:.: . : .:.: .:::: :. .
KIAA04 LNTLHESGYDAGKALQRLVKKPVPKLIEK--C-WTEDEVKRFVKGLRQYGKNFFRIRKEL
360 370 380 390 400
330 340 350 360 370 380
KIAA11 VRTRSVGECVEYYYLWKKSERYDYFAQQTRLGRRKYVPSGTTDADQDLDGSDPDGPGRPR
. .. .:: . .:: :::. . : ..: ::. . .. . :.::
KIAA04 LPNKETGELITFYYYWKKTPE----AASSRAHRRHRRQAVFRRIKTRTASTPVNTPSRP-
410 420 430 440 450 460
390 400 410 420 430 440
KIAA11 PEQDTLTGMRTDPLSVDGTAGGLDEPGVASDGLPSSEPGPCSFQQLDESPAVPLSHRPPA
: .. :
KIAA04 PSSEFLDLSSASEDDFDSEDSEQELKGYACRHCFTTTSKDWHHGGRENILLCTDCRIHFK
470 480 490 500 510 520
544 residues in 1 query sequences
1986961 residues in 2037 library sequences
Scomplib [34.26]
start: Thu Dec 18 15:12:34 2008 done: Thu Dec 18 15:12:34 2008
Total Scan time: 0.470 Total Display time: 0.030
Function used was FASTA [version 34.26.5 April 26, 2007]