hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19392927/chunk_1/iprscan-20080501-19392927.nocrc
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Query sequence: KIAA1182
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF06209.4.fs Cofactor of BRCA1 (COBRA1)                     496.8   2.4e-146   1
PF06209.4.ls Cofactor of BRCA1 (COBRA1)                     140.5    4.3e-39   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF06209.4.fs   1/1       1   210 []   266   479 .]   496.8 2.4e-146
PF06209.4.ls   1/1       1   210 []     1   479 []   140.5  4.3e-39

Alignments of top-scoring domains:
PF06209.4.fs: domain 1 of 1, from 1 to 210: score 496.8, E = 2.4e-146
                   *->TkFLPaLMSlvVDDytfhveqKLPaeEkesaitsieypgtlPeafek
                      T+FLP+LMS +VDDytf+v+qKLPaeEk    + + yp+tlPe+f+k
    KIAA1182     1    TRFLPMLMSFLVDDYTFNVDQKLPAEEK----APVSYPNTLPESFTK 43   

                   YiqenrvAcelglYYtLHiakqrnknallRllpiLvetkdDlAfeDiFLH
                   ++qe+r+Ace+glYY+LHi+kqrnknallRllp+Lvet++DlAf+DiFLH
    KIAA1182    44 FLQEQRMACEVGLYYVLHITKQRNKNALLRLLPGLVETFGDLAFGDIFLH 93   

                   lLtgllillsDEFanEdFCtglFDeFLltgltrKeNVhRHvLrLLlhlHq
                   lLtg l ll+DEFa+EdFC++lFD+F+lt+++rKeNVhRH LrLL hlH 
    KIAA1182    94 LLTGNLALLADEFALEDFCSSLFDGFFLTASPRKENVHRHALRLLIHLHP 143  

                   kvaparLetLmKaLePtaQssEsVkeLYenLkekletldltkesPaqpeE
                   +vap++Le+L+KaLePt+Qs+E+VkeLY++L+ekle+ld++k+sPaq++E
    KIAA1182   144 RVAPSKLEALQKALEPTGQSGEAVKELYSQLGEKLEQLDHRKPSPAQAAE 193  

                   tPdlDlpLksVptPgtl<-*
                   tP+l lpL+sVp+P++l   
    KIAA1182   194 TPALELPLPSVPAPAPL    210  

PF06209.4.ls: domain 1 of 1, from 1 to 210: score 140.5, E = 4.3e-39
                   *->mpslqPVVMcvLkhlPkvpeKkLklvmaDkELYkdcavEVKRQIWqD
                                                                     
    KIAA1182     -    ----------------------------------------------- -    

                   NQaLFGDEVSPLLkQYIlEKEaaLFSdeLsllhnFFsPsPKtRRQGEVVq
                                                                     
    KIAA1182     - -------------------------------------------------- -    

                   KLtqMiGknVKLYDMVLQFLRTLFLRTRNVHYcTLRAELLMsLHDLdvsd
                                                                     
    KIAA1182     - -------------------------------------------------- -    

                   IisVDPCHKFtWCLDACIREkfVDaKRaRELQGFLDgvKkGQEQVLGDLS
                                                                     
    KIAA1182     - -------------------------------------------------- -    

                   MiLCDPfAiNtLalStiriLQeLisqeglPRdspdLlLLLRmLaLGqgAW
                                                                     
    KIAA1182     - -------------------------------------------------- -    

                   dmIDSQvFKEPkldsevvTkFLPaLMSlvVDDytfhveqKLPaeEkesai
                                     T+FLP+LMS +VDDytf+v+qKLPaeEk    
    KIAA1182     1 ------------------TRFLPMLMSFLVDDYTFNVDQKLPAEEK---- 28   

                   tsieypgtlPeafekYiqenrvAcelglYYtLHiakqrnknallRllpiL
                   + + yp+tlPe+f+k++qe+r+Ace+glYY+LHi+kqrnknallRllp+L
    KIAA1182    29 APVSYPNTLPESFTKFLQEQRMACEVGLYYVLHITKQRNKNALLRLLPGL 78   

                   vetkdDlAfeDiFLHlLtgllillsDEFanEdFCtglFDeFLltgltrKe
                   vet++DlAf+DiFLHlLtg l ll+DEFa+EdFC++lFD+F+lt+++rKe
    KIAA1182    79 VETFGDLAFGDIFLHLLTGNLALLADEFALEDFCSSLFDGFFLTASPRKE 128  

                   NVhRHvLrLLlhlHqkvaparLetLmKaLePtaQssEsVkeLYenLkekl
                   NVhRH LrLL hlH +vap++Le+L+KaLePt+Qs+E+VkeLY++L+ekl
    KIAA1182   129 NVHRHALRLLIHLHPRVAPSKLEALQKALEPTGQSGEAVKELYSQLGEKL 178  

                   etldltkesPaqpeEtPdlDlpLksVptPgtl<-*
                   e+ld++k+sPaq++EtP+l lpL+sVp+P++l   
    KIAA1182   179 EQLDHRKPSPAQAAETPALELPLPSVPAPAPL    210  

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