hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-19213293/chunk_1/iprscan-20080501-19213293.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1171 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00584 314.3 8.4e-90 1 SM00164 -4.3 0.0022 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00164 1/1 78 295 .. 1 310 [] -4.3 0.0022 SM00584 1/1 378 590 .. 1 261 [] 314.3 8.4e-90 Alignments of top-scoring domains: SM00164: domain 1 of 1, from 78 to 295: score -4.3, E = 0.0022 *->vrkGvppslRgeVWklLlnaqpmntsnweraqkakdaesqflvvndd ++ +++ lRg+V++ L++ p +++ ++ KIAA1171 78 GYWAQSHALRGKVYQRLIRDIP-CRTVTPD----------------- 106 rlkdeYsrllnqtapkdkstdleqavssnnkdfeeqPLsiwnffqdndsl Ys++ + +k +s+ KIAA1171 107 --ASVYSDIVGKIVGKHSSS------------------------------ 124 dqIekDlkRtfpelsfFqfrsrdnqkevll.d.dengpgqesLrrvLkaY ++p +f ++ ++ +n g + r++L++ KIAA1171 125 ---------CLPLPEFVDN--------TQVpSyCLNARGEGAVRKILLCL 157 slynpehivgYcQGmnflaapLLlvmpiydEedAFwcfvkL..merylpn + p+ ++ c+ + ++a+LL++ dE+++F +++ +++++++ KIAA1171 158 ANQFPD--ISFCPALPAVVALLLHYSI--DEAECFEKACRIlaCNDPGRR 203 flfkdtnnfytpdlsglqadqlvldslleey...lPeLykHLqeqdkqsk + ++ + + ++ +l+ +y + ++L+ +e KIAA1171 204 LI--------DQSFLAFESSCMTFGDLVNKYcqaAHKLMVAVSE------ 239 kkhvdkleidpslyalrWfLtlFarelPledvlRiwDvlfaellrlgsef d + + W ++lF+ elPl + +R++Dv+++e g+++ KIAA1171 240 ---------DVLQVYADWQRWLFG-ELPLCYFARVFDVFLVE----GYKV 275 lfkialaiLklnedkllkld<-* l ++alaiLk +++ KIAA1171 276 LYRVALAILKFFHKVRAGQP 295 SM00584: domain 1 of 1, from 378 to 590: score 314.3, E = 8.4e-90 *->ssiLseeilalinsllPtrqrgyepWtLLYsssqHGySlntlyrkve s+i+s++++++i+s++P+r++++ ++ LL+ss+qHGySl+++y+++e KIAA1171 378 SEIVSVREMRDIWSWVPERFALC-QPLLLFSSLQHGYSLARFYFQCE 423 gygprsgrkPtllvIkdkakvanekSssdaisldAtidrdyssstirtdk g++p tll+Ik+ KIAA1171 424 GHEP------TLLLIKT--------------------------------- 434 avqadfGadfrtdgevfGayaSqawresdhrgkG.k.aFyGtgesaFLFq t++ev+Gay+S++w+e+++ +G+k +F+Gtge+ F+F+ KIAA1171 435 -----------TQKEVCGAYLSTDWSERNK--FGgKlGFFGTGEC-FVFR 470 LnppngvePkfavydatgknknlamsdkn......d.dL.HSa....... L+ P++++y+++ +++++++++++ +++ +L+HSa++++ ++ KIAA1171 471 LQ------PEVQRYEWVVIKHPELTKPPPlmaaepTaPLsHSAssdpadr 514 ..........hLatrgnyfyingtsdslpiGgGgGgqinyfgLwiDedln ++ ++ +L++++++++++g+sd+l +GgGgG+ +L+iD+dln KIAA1171 515 lspflaarhfNLPSKTESMFMAGGSDCLIVGGGGGQ-----ALYIDGDLN 559 hGrssnhasckTfgNepllsnvGfekdedFlIldiEVWgfg<-* +Gr+s +c+Tf+N+pl+ +e+FlI ++E+Wgf+ KIAA1171 560 RGRTS---HCDTFNNQPLC-------SENFLIAAVEAWGFQ 590 //