hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19213293/chunk_1/iprscan-20080501-19213293.nocrc
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Query sequence: KIAA1171
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07534.6.fs TLD                                            138.5    1.1e-38   2
PF07534.6.ls TLD                                            119.2    1.1e-32   1
PF00566.9.ls TBC domain                                     -55.9     0.0012   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00566.9.ls   1/1      83   298 ..     1   219 []   -55.9   0.0012
PF07534.6.fs   1/2     404   481 ..     1    87 [.    87.9    2e-24
PF07534.6.ls   1/1     404   590 ..     1   165 []   119.2  1.1e-32
PF07534.6.fs   2/2     529   590 ..    94   165 .]    50.6  6.9e-14

Alignments of top-scoring domains:
PF00566.9.ls: domain 1 of 1, from 83 to 298: score -55.9, E = 0.0012
                   *->vkeGvpsstrakVWavcsgAyqlrYAsage..Yerllrrgdekesqa
                               r+kV   +    + r   ++ + Y  ++ +  +k s +
    KIAA1171    83    -----SHALRGKVYQRLIRDIPCRTVTPDAsvYSDIVGKIVGKHSSS 124  

                   vdkIekDvkRtLvkesaFqsrGKGegiskLrrvLvAYswknPdvgYcQGM
                          v  t v       r    g    r++L       Pd+ +c + 
    KIAA1171   125 CLPLPEFVDNTQVPSYCLNAR----GEGAVRKILLCLANQFPDISFCPAL 170  

                   NVvaApfLllykSEeqAFyfLdrLlenvvPlKYylpdldGvrlDq..kvL
                     v+A +L     E + F   +r+l    P+          + Dq+ + +
    KIAA1171   171 PAVVALLLHYSIDEAECFEKACRILACNDPG--------RRLIDQsfLAF 212  

                   dsfveellprLYeYLlskgvdlkvvsLpwfLsLyat.......tlPleeA
                   +s        +  Y         +vs    L +ya+ ++   + lPl + 
    KIAA1171   213 ESSCMTFGDLVNKYCQAAHKLMVAVS-EDVLQVYADwqrwlfgELPLCYF 261  

                   lrIfDiLFadGivllfrvaLAvLkil....keqiLda<-*
                    r+fD +  +G+ +l rvaLA+Lk +++ ++ q L+    
    KIAA1171   262 ARVFDVFLVEGYKVLYRVALAILKFFhkvrAGQPLES    298  

PF07534.6.fs: domain 1 of 2, from 404 to 481: score 87.9, E = 2e-24
                   *->LLYssskHGtSlntllrkvekeyddkgPtllvikdtDgqvFGayass
                      LL+ss +HG+Sl +++  +e    +++Ptll+ik+t  +v Gay s+
    KIAA1171   404    LLFSSLQHGYSLARFYFQCE----GHEPTLLLIKTTQKEVCGAYLST 446  

                   swrespvK...R.nFyGtgDsesCFLFtlnkelPpkkfavyrwT<-*
                    w+e++ K ++   F+Gtg  e+ F+F+l    P  +++ y+w+   
    KIAA1171   447 DWSERN-KfggKlGFFGTG--EC-FVFRLQ---P--EVQRYEWV    481  

PF07534.6.ls: domain 1 of 1, from 404 to 590: score 119.2, E = 1.1e-32
                   *->LLYssskHGtSlntllrkvekeyddkgPtllvikdtDgqvFGayass
                      LL+ss +HG+Sl +++  +e    +++Ptll+ik+t  +v Gay s+
    KIAA1171   404    LLFSSLQHGYSLARFYFQCE----GHEPTLLLIKTTQKEVCGAYLST 446  

                   swrespvK...R.nFyGtgDsesCFLFtlnk...................
                    w+e++ K ++   F+Gtg  e+ F+F+l  + ++ +    ++++ ++++
    KIAA1171   447 DWSERN-KfggKlGFFGTG--EC-FVFRLQPevqryewvvikhpeltkpp 492  

                   .....................elPp.kkfavyr.wTGknDddksnnfiyl
                   +    +++ + +++ ++++ + l+p    ++++ +++ +     + f+ +
    KIAA1171   493 plmaaeptaplshsassdpadRLSPfLAARHFNlPSKTE-----SMFMAG 537  

                   ntdqqtyPngLgiGGgsgrfgLwlDedlknGesspesceTFnnppLlskd
                    +d       L  GGg g ++L++D+dl++G++s   c TFnn pL   +
    KIAA1171   538 GSD------CLIVGGG-GGQALYIDGDLNRGRTSH--CDTFNNQPL--CS 576  

                   edFkIqdiEvWgvg<-*
                   e F I  +E+Wg++   
    KIAA1171   577 ENFLIAAVEAWGFQ    590  

PF07534.6.fs: domain 2 of 2, from 529 to 590: score 50.6, E = 6.9e-14
                   *->ks.nnfiylntdqqtyPngLgiGGgsgrfgLwlDedlknGesspesc
                      k ++ f+ + +d       L  GGg g ++L++D+dl++G++s   c
    KIAA1171   529    KTeSMFMAGGSD------CLIVGGG-GGQALYIDGDLNRGRTSH--C 566  

                   eTFnnppLlskdedFkIqdiEvWgvg<-*
                    TFnn pL   +e F I  +E+Wg++   
    KIAA1171   567 DTFNNQPL--CSENFLIAAVEAWGFQ    590  

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