# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hj01210s1.fasta.huge -Q ../query/KIAA1161.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1161, 680 aa
 vs ./tmplib.24314 library

1986825 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.1702+/-0.0046; mu= 18.5709+/- 0.313
 mean_var=77.7811+/-18.313, 0's: 0 Z-trim: 3  B-trim: 0 in 0/40
 Lambda= 0.145424

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0088  ( 943 res)   ha01225                     ( 943)  258 64.4 5.5e-11


>>KIAA0088  ( 943 res)   ha01225                          (943 aa)
 initn: 248 init1: 167 opt: 258  Z-score: 289.1  bits: 64.4 E(): 5.5e-11
Smith-Waterman score: 326;  25.962% identity (48.317% similar) in 416 aa overlap (295-668:404-801)

          270       280       290       300       310       320    
KIAA11 RYFNKPSRVPAPEAFRDPIWSTWALYGRAVDQDKVLRFAQQIRLHHFNSSHLEIDDMYTP
                                     :.  ::.  : .  :..  . . .:  .. 
KIAA00 VFRQYASLTGTQALPPLFSLGYHQSRWNYRDEADVLEVDQGFDDHNLPCDVIWLDIEHAD
           380       390       400       410       420       430   

          330       340       350       360        370        380  
KIAA11 AYGDFDFDEVKFPNASDMFRRLRDAGFRVTLWVHPFVNYNSS-RFGEGVERE-LFVREPT
       .   : .:  .::.   :..:: .   ...  : : .. .:. :  : ..   :.:.   
KIAA00 GKRYFTWDPSRFPQPRTMLERLASKRRKLVAIVDPHIKVDSGYRVHEELRNLGLYVKTRD
           440       450       460       470       480       490   

            390        400       410       420                 430 
KIAA11 GRLPALVRW-WNGIGAVLDFTHPKARDWFQGHLRRLRSRYSVASF----------KFDAG
       :       : : : ..  :::.:  : :. . .     . :. ..           :.. 
KIAA00 GS--DYEGWCWPGSAGYPDFTNPTMRAWWANMFSYDNYEGSAPNLFVWNDMNEPSVFNGP
             500       510       520       530       540       550 

                           440       450       460       470       
KIAA11 EVSYLP----------RD----FSTYRPLPDPSVWSRRYTEMALPFFSLAEVRVGYQSQN
       ::..:           ::    .. :  .   .   .:   :  ::       .:  :: 
KIAA00 EVTMLKDAQHYGGWEHRDVHNIYGLYVHMATADGLRQRSGGMERPFVLARAFFAG--SQR
             560       570       580       590       600           

       480       490       500       510       520       530       
KIAA11 ISCFFRLVDRDSVWGYDLGLRSLIPAVLTVSMLGYPFILPDMVGGNAVPQRTAGGDVPER
       ..  .   :  . : .   :.  ::  :.....:  :   : :::            :: 
KIAA00 FGAVWTG-DNTAEWDH---LKISIPMCLSLGLVGLSFCGAD-VGGFF--------KNPEP
     610        620          630       640        650              

       540       550              560       570       580       590
KIAA11 ELYIRWLEVAAFMPAMQFSI-------PPWRYDAEVVAIAQKFAALRASLVAPLLLELAG
       :: .:: ...:..: ..           ::   ..   : .   . : ::. :.   :  
KIAA00 ELLVRWYQMGAYQPFFRAHAHLDTGRREPWLLPSQHNDIIRDALGQRYSLL-PFWYTLLY
        660       670       680       690       700        710     

              600       610       620       630       640          
KIAA11 EVTDTGDPIVRPLWWIAPGDETAHRIDSQFLIGDTLLVAPVLEPGKQERDVYLPA-GK-W
       ..   : :..::::   : : :.  ::.:.:.::.::: :: . : .  .::::. :. :
KIAA00 QAHREGIPVMRPLWVQYPQDVTTFNIDDQYLLGDALLVHPVSDSGAHGVQVYLPGQGEVW
         720       730       740       750       760       770     

         650          660       670       680                      
KIAA11 ---RSYKGELFDKT---PVLLTDYPVDLDEIAYFTWAS                      
          .::. .   .:   :: :.. ::                                  
KIAA00 YDIQSYQKHHGPQTLYLPVTLSSIPVFQRGGTIVPRWMRVRRSSECMKDDPITLFVALSP
         780       790       800       810       820       830     




680 residues in 1 query   sequences
1986825 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:11:31 2008 done: Thu Dec 18 15:11:31 2008
 Total Scan time:  0.540 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]