hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-18533425/chunk_1/iprscan-20080501-18533425.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1154
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03607.8.ls Doublecortin                                   169.6    7.2e-48   2
PF03607.8.fs Doublecortin                                   165.8    4.3e-47   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03607.8.fs   1/2      34    95 ..     1    69 []    98.9  7.9e-28
PF03607.8.ls   1/2      34    95 ..     1    69 []   100.8  3.6e-27
PF03607.8.fs   2/2     156   216 ..     1    69 []    66.9  1.3e-18
PF03607.8.ls   2/2     156   216 ..     1    69 []    68.8  1.6e-17

Alignments of top-scoring domains:
PF03607.8.fs: domain 1 of 2, from 34 to 95: score 98.9, E = 7.9e-28
                   *->lvvnrkrdvksfdaLLedLtkvvTekiklptGaaAvrklYTtDGshr
                      +v+++k+ v+sf+++L++    vT +++ p+Ga  vr++YT++++hr
    KIAA1154    34    VVIHEKK-VSSFEVFLKE----VTGGVQAPFGA--VRNIYTPRTGHR 73   

                   islldeledggvYVAsgseaFk<-*
                   i++ld++++gg+YVA+g+eaFk   
    KIAA1154    74 IRKLDQIQSGGNYVAGGQEAFK    95   

PF03607.8.ls: domain 1 of 2, from 34 to 95: score 100.8, E = 3.6e-27
                   *->lvvnrkrdvksfdaLLedLtkvvTekiklptGaaAvrklYTtDGshr
                      +v+++k+ v+sf+++L++    vT +++ p+Ga  vr++YT++++hr
    KIAA1154    34    VVIHEKK-VSSFEVFLKE----VTGGVQAPFGA--VRNIYTPRTGHR 73   

                   islldeledggvYVAsgseaFk<-*
                   i++ld++++gg+YVA+g+eaFk   
    KIAA1154    74 IRKLDQIQSGGNYVAGGQEAFK    95   

PF03607.8.fs: domain 2 of 2, from 156 to 216: score 66.9, E = 1.3e-18
                   *->lvvnrkrdvksfdaLLedLtkvvTekiklptGaaAvrklYTtDGshr
                      l++ rk+    +d +L+     vTeki l+ Ga  v +lYT++G ++
    KIAA1154   156    LLIPRKT-LNQWDHVLQM----VTEKITLRSGA--VHRLYTLEG-KL 194  

                   islldeledggvYVAsgseaFk<-*
                   + +  ele+g++YVA+g+++Fk   
    KIAA1154   195 VESGAELENGQFYVAVGRDKFK    216  

PF03607.8.ls: domain 2 of 2, from 156 to 216: score 68.8, E = 1.6e-17
                   *->lvvnrkrdvksfdaLLedLtkvvTekiklptGaaAvrklYTtDGshr
                      l++ rk+    +d +L+     vTeki l+ Ga  v +lYT++G ++
    KIAA1154   156    LLIPRKT-LNQWDHVLQM----VTEKITLRSGA--VHRLYTLEG-KL 194  

                   islldeledggvYVAsgseaFk<-*
                   + +  ele+g++YVA+g+++Fk   
    KIAA1154   195 VESGAELENGQFYVAVGRDKFK    216  

//