hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-18451288/chunk_1/iprscan-20080501-18451288.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1149 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00026.14.fs Eukaryotic aspartyl protease 70.8 5.6e-20 3 PF00026.14.ls Eukaryotic aspartyl protease 49.6 1.4e-16 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00026.14.fs 1/3 105 235 .. 1 148 [. 37.5 1.5e-10 PF00026.14.ls 1/1 105 449 .. 1 352 [] 49.6 1.4e-16 PF00026.14.fs 2/3 263 355 .. 171 265 .. 23.8 1.1e-06 Alignments of top-scoring domains: PF00026.14.fs: domain 1 of 3, from 105 to 235: score 37.5, E = 1.5e-10 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->eYygtIsIGTPpQkFtVvFDTGSSDLWVPDsSvyCtssySaqTniAC Yy + ++G+PpQ+++ ++DTGSS++ V + ++ KIAA1149 105 GYYVEMTVGSPPQTLNILVDTGSSNFAVG--AAPHPFL--------- 140 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxx kshgtFDPSkSSTYkslGttIfsIsYGdGSSasGflgqDTVtv...GGis h+ + + SSTY+ l+++ + Y G G lg+D V+++++ +++ KIAA1149 141 --HRYYQRQLSSTYRDLRKG-VYVPYTQGK-WEGELGTDLVSIphgPNVT 186 RF xxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx vtnQqFGlatkEPGsfFvt.avfDGILGlGfpsieavggssaftytpVfd v + a +E+ +fF++++ GILGl++ +i+ + p+fd KIAA1149 187 VR--ANIAAITESDKFFINgSNWEGILGLAYAEIARPD----DSLEPFFD 230 RF xxxxx nlksQ<-* l++Q KIAA1149 231 SLVKQ 235 PF00026.14.ls: domain 1 of 1, from 105 to 449: score 49.6, E = 1.4e-16 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->eYygtIsIGTPpQkFtVvFDTGSSDLWVPDsSvyCtssySaqTniAC Yy + ++G+PpQ+++ ++DTGSS++ V + ++ KIAA1149 105 GYYVEMTVGSPPQTLNILVDTGSSNFAVG--AAPHPFL--------- 140 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxx kshgtFDPSkSSTYkslGttIfsIsYGdGSSasGflgqDTVtv...GGis h+ + + SSTY+ l+++ + Y G G lg+D V+++++ +++ KIAA1149 141 --HRYYQRQLSSTYRDLRKG-VYVPYTQGK-WEGELGTDLVSIphgPNVT 186 RF xxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx vtnQqFGlatkEPGsfFvt.avfDGILGlGfpsieavggssaftytpVfd v + a +E+ +fF++++ GILGl++ +i+ + p+fd KIAA1149 187 VR--ANIAAITESDKFFINgSNWEGILGLAYAEIARPD----DSLEPFFD 230 RF xxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxx nlksQGLIdspaFSvYL........NsddgsaqasgGeiiFGGvDpskYs l++Q + ++FS++L + + + + s+ a+ gG+ i GG+D s+Y+ KIAA1149 231 SLVKQTHV-PNLFSLQLcgagfplnQSEV-LAS-VGGSMIIGGIDHSLYT 277 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx GsltwvpVtssddegivsqgyWqitldsitvggsaCHttfcssGcq.... Gsl ++p+ ++ y+ + + +++++g+ + + c + + KIAA1149 278 GSLWYTPIR--------REWYYEVIIVRVEINGQ----DLKMD-CKeyny 314 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ..AIlDTGTsLlygPssivskiakavGAsese.................. ++ I+D+GT+ l +P+ + ++ +k + A++s ++ +++ +++ + KIAA1149 315 dkSIVDSGTTNLRLPKKVFEAAVKSIKAASSTekfpdgfwlgeqlvcwqa 364 RF xxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxx GeYvvdCdsisslpdvtFfigG......kkitVPpsayvlqnsqggssPn G + + + p+++ +++G+ ++++ +it+ p +y +++ ++s KIAA1149 365 GT--TPWNIF---PVISLYLMGevtnqsFRITILPQQYLRPVEDVATS-Q 408 RF xxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx diCl.sGfqssddipppggplwILGDvFLRsyYvVFDrdNnrvGlApa<- d C++++++ +++g ++ G v + +YvVFDr+ r+G+A KIAA1149 409 DDCYkFAISQ-----SSTGTVM--GAVIMEGFYVVFDRARKRIGFAVS 449 RF * KIAA1149 - - PF00026.14.fs: domain 2 of 3, from 263 to 355: score 23.8, E = 1.1e-06 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->gGeiiFGGvDpskYsGsltwvpVtssddegivsqgyWqitldsitvg gG+ i GG+D s+Y+Gsl ++p+ ++ y+ + + +++++ KIAA1149 263 GGSMIIGGIDHSLYTGSLWYTPIR--------REWYYEVIIVRVEIN 301 RF xxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx gsaCHttfcssGcq......AIlDTGTsLlygPssivskiakavGAsese g+ + + c + + ++ I+D+GT+ l +P+ + ++ +k + A++s KIAA1149 302 GQ----DLKMD-CKeynydkSIVDSGTTNLRLPKKVFEAAVKSIKAASST 346 RF xxxx .....GeYv<-* ++ ++G ++ KIAA1149 347 ekfpdGFWL 355 //