hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-18332554/chunk_1/iprscan-20080501-18332554.nocrc
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Query sequence: KIAA1142
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 315.0    5.2e-90   1
SM00219                                                  57.2    1.1e-14   1
SM00285                                                  62.1    7.3e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00285    1/1      40    75 ..     1    38 []    62.1  7.3e-14
SM00219    1/1     197   448 ..     1   280 []    57.2  1.1e-14
SM00220    1/1     197   448 ..     1   231 []   315.0  5.2e-90

Alignments of top-scoring domains:
SM00285: domain 1 of 1, from 40 to 75: score 62.1, E = 7.3e-14
                   *->IStPtGnFkHiaHVGPfDgatgeFtglptewesllkts<-*
                      IS+P+ nF+H++H G fD+++++Ftglp +w+sl+  s   
    KIAA1142    40    ISAPS-NFEHRVHTG-FDQHEQKFTGLPRQWQSLIEES    75   

SM00219: domain 1 of 1, from 197 to 448: score 57.2, E = 1.1e-14
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda...keeFlrEa
                      l    k+GeG  G+V+ +t ++++  VAVK++   +++++e + +E 
    KIAA1142   197    LDNFIKIGEGSTGIVCIATVRssgKLVAVKKMDLRKqqrRELLFNEV 243  

                   kiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldyLr
                    iM+ +  +H+N+V ++   + +       + l++vmE+ egG+L d   
    KIAA1142   244 VIMRDY--QHENVVEMYNSYLVG-------DELWVVMEFLEGGALTDIVT 284  

                   knrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenkvvKI
                    +r   + ++    +l + +  + L+ ++++HRD+    +L++++++vK 
    KIAA1142   285 HTR--MNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKL 332  

                   sDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkdgkFt
                   sDFG +  +  +        + r k+  g+       WmAPE +    + 
    KIAA1142   333 SDFGFCAQVSKE--------VPRRKSLVGTP-----YWMAPELISRLPYG 369  

                   skSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGy..Rlpk
                   ++ D+WS G++  E+  +Ge+PY +      ++  +++ +++  ++Rl+ 
    KIAA1142   370 PEVDIWSLGIMVIEMV-DGEPPYFN-----EPPLKAMKMIRDNLppRLKN 413  

                   PendlpiSsvtCPdelYdlMlqCWaedPedRPtFsel..verl<-*
                    +          ++ l     +   +dP++R t +el ++ +l   
    KIAA1142   414 LHK--------VSPSLKGFLDRLLVRDPAQRATAAELlkHPFL    448  

SM00220: domain 1 of 1, from 197 to 448: score 315.0, E = 5.2e-90
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik.......erilrEi
                       +   k+G+G+ G V+ a+ +++g+lvA+K+++ ++++++e + +E+
    KIAA1142   197    LDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDlrkqqrrELLFNEV 243  

                   kiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrrgl
                    i++  +H+N+V +y ++  +d+l++VmE++eG  G L d+  + +    
    KIAA1142   244 VIMRDyQHENVVEMYNSYLVgDELWVVMEFLEG--GALTDIVTHTR---- 287  

                   rkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvKlaD
                      ++E++++ ++  +l+aL  LH qg+iHRD+K + iLL+++++vKl+D
    KIAA1142   288 ---MNEeQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHdgRVKLSD 334  

                   FGlArql.......ttfvGTpeYmAPEvl...gYgkpavDiWSlGcilyE
                   FG+++q++++ ++++++vGTp++mAPE++++ +Yg+ +vDiWSlG++++E
    KIAA1142   335 FGFCAQVskevprrKSLVGTPYWMAPELIsrlPYGP-EVDIWSLGIMVIE 383  

                   lltGkpPFp..qldlifkkig.............SpeakdLikklLvkdP
                   ++ G+pP+ ++ + + +k+i+++ +++ ++ ++ Sp++k ++++lLv+dP
    KIAA1142   384 MVDGEPPYFnePPLKAMKMIRdnlpprlknlhkvSPSLKGFLDRLLVRDP 433  

                   ekRlta.eaLedeldikaHPff<-*
                   ++R ta e+L+       HPf+   
    KIAA1142   434 AQRATAaELLK-------HPFL    448  

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