# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk01004s1.fasta.huge -Q ../query/KIAA1140.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1140, 752 aa
 vs ./tmplib.24314 library

1986753 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 5.0392+/-0.00522; mu= 14.5545+/- 0.355
 mean_var=95.3201+/-22.491, 0's: 0 Z-trim: 4  B-trim: 0 in 0/40
 Lambda= 0.131366

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0103  ( 299 res)   ha00802                     ( 299)  143 37.5  0.0023


>>KIAA0103  ( 299 res)   ha00802                          (299 aa)
 initn: 151 init1: 117 opt: 143  Z-score: 152.1  bits: 37.5 E(): 0.0023
Smith-Waterman score: 143;  24.615% identity (49.231% similar) in 195 aa overlap (548-741:3-188)

       520       530       540       550        560       570      
KIAA11 RQVLRLWQTLYSFSQLGGLEKDGSFGEGLTMKKQSGMH-LTLPDAHDADSGSRRASSIAA
                                     : : : .. .:  . .:     :. .:  .
KIAA01                             GKMAKVSELYDVTWEEMRDKMRKWREENSRNS
                                           10        20        30  

        580       590       600       610       620       630      
KIAA11 SRLEEAMSELTMPSSVLKQGPMQLWTTLEQIWLQAAELFMEQQHLKEAGFCIQEAAGLFP
        .. :.  :: .   . : :  ..:   ::. . : .   ..  :    ::.::    ::
KIAA01 EQIVEVGEEL-INEYASKLGD-DIWIIYEQVMIAALDYGRDDLAL----FCLQELRRQFP
             40         50         60        70            80      

        640       650       660       670       680       690      
KIAA11 TSHSVLYMRGRLAEVKGNLEEAKQLYKEALTVNPDGVRIMHSLGLMLSRLGHKSLAQKVL
        :: :  . :   :.    ..: ::: . :  .: ..   .    . .  :..  : . :
KIAA01 GSHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNTAARKRKIAIRKAQGKNVEAIREL
         90       100       110       120       130       140      

        700       710       720       730       740       750      
KIAA11 RDAVERQSTCHEAWQGLGEVLQAQGQNEAAVDCFLTALELEASSPVLPFSIIPREL    
        . .:.    .:::. :.:.   . .   :. :.    ::  ..:               
KIAA01 NEYLEQFVGDQEAWHELAELYINEHDYAKAAFCLE---ELMMTNPHNHLYCQQYAEVKYT
        150       160       170       180          190       200   

KIAA01 QGGLENLELSRKYFAQALKLNNRNMRALFGLYMSASHIASNPKASAKTKKDNMKYASWAA
           210       220       230       240       250       260   




752 residues in 1 query   sequences
1986753 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:10:49 2008 done: Thu Dec 18 15:10:49 2008
 Total Scan time:  0.580 Total Display time:  0.000

Function used was FASTA [version 34.26.5 April 26, 2007]