hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-17452255/chunk_1/iprscan-20080501-17452255.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1113
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00643.14.ls B-box zinc finger                           110.7    3.9e-30   2
PF00643.14.fs B-box zinc finger                           106.9    5.4e-29   2
PF00439.15.fs Bromodomain                                  73.3    4.6e-20   1
PF00439.15.ls Bromodomain                                  73.4    6.6e-19   1
PF00628.19.fs PHD-finger                                   49.6    1.7e-15   2
PF00628.19.ls PHD-finger                                   49.1    1.4e-11   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00643.14.fs   1/2     216   263 ..     1    50 []    49.3  5.9e-12
PF00643.14.ls   1/2     216   263 ..     1    50 []    51.3  3.1e-12
PF00643.14.ls   2/2     275   316 ..     1    50 []    59.5    1e-14
PF00643.14.fs   2/2     275   316 ..     1    50 []    57.6  3.7e-14
PF00628.19.fs   2/2     893   936 ..     1    49 [.    46.9  1.2e-14
PF00628.19.ls   1/1     893   938 ..     1    51 []    49.1  1.4e-11
PF00439.15.ls   1/1     966  1055 ..     1    92 []    73.4  6.6e-19
PF00439.15.fs   1/1     983  1055 ..    19    92 .]    73.3  4.6e-20

Alignments of top-scoring domains:
PF00643.14.fs: domain 1 of 2, from 216 to 263: score 49.3, E = 5.9e-12
                   *->ekervCpeHgdneklslFCedDgqlLCvvCrlsgeHqanklfrgHtv
                      + e+vC++++dn+ +  FC+++g++LC +C ++  Hq++k++++H +
    KIAA1113   216    KSEQVCTSCEDNASAVGFCVECGEWLCKTCIEA--HQRVKFTKDHLI 260  

                   vpl<-*
                   +     
    KIAA1113   261 RKK    263  

PF00643.14.ls: domain 1 of 2, from 216 to 263: score 51.3, E = 3.1e-12
                   *->ekervCpeHgdneklslFCedDgqlLCvvCrlsgeHqanklfrgHtv
                      + e+vC++++dn+ +  FC+++g++LC +C ++  Hq++k++++H +
    KIAA1113   216    KSEQVCTSCEDNASAVGFCVECGEWLCKTCIEA--HQRVKFTKDHLI 260  

                   vpl<-*
                   +     
    KIAA1113   261 RKK    263  

PF00643.14.ls: domain 2 of 2, from 275 to 316: score 59.5, E = 1e-14
                   *->ekervCpeHgdneklslFCedDgqlLCvvCrlsgeHqanklfrgHtv
                      +++++Cp+H+ +e+l+lFCe+++ l+C++C+l  eH      + H++
    KIAA1113   275    QRPVFCPVHK-QEQLKLFCETCDRLTCRDCQLL-EH------KEHRY 313  

                   vpl<-*
                   ++l   
    KIAA1113   314 QFL    316  

PF00643.14.fs: domain 2 of 2, from 275 to 316: score 57.6, E = 3.7e-14
                   *->ekervCpeHgdneklslFCedDgqlLCvvCrlsgeHqanklfrgHtv
                      +++++Cp+H+ +e+l+lFCe+++ l+C++C+l  eH      + H++
    KIAA1113   275    QRPVFCPVHK-QEQLKLFCETCDRLTCRDCQLL-EH------KEHRY 313  

                   vpl<-*
                   ++l   
    KIAA1113   314 QFL    316  

PF00628.19.fs: domain 2 of 2, from 893 to 936: score 46.9, E = 1.2e-14
                   *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyC
                      +C+vC+      ggdll+C++C++ fHl C+ p+l     p+++W+C
    KIAA1113   893    WCAVCQN-----GGDLLCCEKCPKVFHLTCHVPTLL--SFPSgdWIC 932  

                   peCk<-*
                     C+   
    KIAA1113   933 TFCR    936  

PF00628.19.ls: domain 1 of 1, from 893 to 938: score 49.1, E = 1.4e-11
                   *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyC
                      +C+vC+      ggdll+C++C++ fHl C+ p+l     p+++W+C
    KIAA1113   893    WCAVCQN-----GGDLLCCEKCPKVFHLTCHVPTLL--SFPSgdWIC 932  

                   peCkpk<-*
                     C+     
    KIAA1113   933 TFCRDI    938  

PF00439.15.ls: domain 1 of 1, from 966 to 1055: score 73.4, E = 6.6e-19
                   *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk
                       ++  + +l++l  h+  ++ f +pV +s   +P+YY+iIkkPMDL+
    KIAA1113   966    DQRKCERLLLYLYCHE-LSIEFQEPVPAS---IPNYYKIIKKPMDLS 1008 

                   TIkkklkngk...YissleeFvaDfnLmfsNAktYNepdsevykdAkk<-
                   T+kkkl++ ++++Y + +++FvaD++L+f+N+  +Ne   +v  +A +  
    KIAA1113  1009 TVKKKLQKKHsqhY-QIPDDFVADVRLIFKNCERFNEMMKVVQVYADT   1055 

                   *
                    
    KIAA1113     -   -    

PF00439.15.fs: domain 1 of 1, from 983 to 1055: score 73.3, E = 4.6e-20
                   *->alpflfpVlpsklelPDYYeiIkkPMDLkTIkkklkngk...Yissl
                      ++ f +pV +s   +P+YY+iIkkPMDL+T+kkkl++ ++++Y + +
    KIAA1113   983    SIEFQEPVPAS---IPNYYKIIKKPMDLSTVKKKLQKKHsqhY-QIP 1025 

                   eeFvaDfnLmfsNAktYNepdsevykdAkk<-*
                   ++FvaD++L+f+N+  +Ne   +v  +A +   
    KIAA1113  1026 DDFVADVRLIFKNCERFNEMMKVVQVYADT    1055 

//