# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hj06379mrp1.fasta.huge -Q ../query/KIAA1113.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1113, 1131 aa vs ./tmplib.24314 library 1986374 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 11.9969+/- 0.01; mu= -14.7850+/- 0.682 mean_var=440.1962+/-105.790, 0's: 0 Z-trim: 7 B-trim: 133 in 1/39 Lambda= 0.061130 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0298 ( 901 res) hf00341(revised) ( 901) 843 89.2 2.8e-18 >>KIAA0298 ( 901 res) hf00341(revised) (901 aa) initn: 776 init1: 666 opt: 843 Z-score: 419.9 bits: 89.2 E(): 2.8e-18 Smith-Waterman score: 851; 29.928% identity (62.366% similar) in 558 aa overlap (182-722:3-537) 160 170 180 190 200 210 KIAA11 SFCLRCLPEPERQLSVPIPGGSNGDIQQVGVIRCPVCRQECRQIDLVDNYFVKDT-SEAP .: :: :.. :.....:.. . .: : KIAA02 CELISCPGCERVYLTRDVTEHFFLHCVPTEQP 10 20 30 220 230 240 250 260 270 KIAA11 SSSDEKSEQVCTSCEDNASAVGFCVECGEWLCKTCIEAHQRVKFTKDHLIRKKEDVSESV : . :. :... .: .:. :..:::..: : :.. .. . . : .: KIAA02 -----KMARNCSECKEKRAAHILCTYCNRWLCSSCTEEHRHSPVPGGPFFPRAQKGSPGV 40 50 60 70 80 280 290 300 310 320 KIAA11 -GASGQRPVFCPVHKQEQLKLFCETCDRLTCRDCQLLEHKEHRYQFLEEAFQNQKGAIEN :. :. ..::.: :: ::::::::: :::..: ..:::::: . .::..:::. .:. KIAA02 NGGPGDFTLYCPLHTQEVLKLFCETCDMLTCHSCLVVEHKEHRCRHVEEVLQNQRMLLEG 90 100 110 120 130 140 330 340 350 360 370 380 KIAA11 LLAKLLEKKNYVHFAATQVQNRIKEVNETNKRVEQEIKVAIFTLINEINKKGKSLLQQLE . ... .::. .. .: :...:: ::.. ...::..::.: ..:.::.::....:...:: KIAA02 VTTQVAHKKSSLQTSAKQIEDRIFEVKHQHRKVENQIKMAKMVLMNELNKQANGLIEELE 150 160 170 180 190 200 390 400 410 420 430 440 KIAA11 NVTKERQMKLLQQQNDITGLSRQVKHVMNFTNWAIASGSSTALLYSKRLITFQLRHILKA ..:.::. :: :: ..: :.:: .::.:: :::. : .:. .:.::.::.::....:.. KIAA02 GITNERKRKLEQQLQSIMVLNRQFEHVQNFINWAVCSKTSVPFLFSKELIVFQMQRLLET 210 220 230 240 250 260 450 460 470 480 490 500 KIAA11 RCDPVPAANGAIRFHCDPTFWAKNVVNLGNLVIES-----KPAPGYTPNVVVGQVPPGTN :. :.. .::: .:.::.:....:: .. :. ::.: . :. : . KIAA02 SCNTDPGSPWSIRFTWEPNFWTKQLASLGCITTEGGQMSRADAPAYGG--LQGSSPFYQS 270 280 290 300 310 320 510 520 530 540 550 560 KIAA11 HISKTPGQINLAQLRLQHMQQQVYAQKHQQLQQMRMQQPPAPVPTTTTTTQQHPRQAAPQ : : . : :.. . .. : ... .: .: . : : . : KIAA02 HQSPVAQQEALSHPSHKFQSPAVCSSS----VCCSHCSPVSP----SLKGQVPPPSIHPA 330 340 350 360 370 570 580 590 600 610 620 KIAA11 MLQQQPPRLISVQTMQRGNMNCGAFQAHQMRLAQNAARIPGIPRHSGPQYSMMQPHLQRQ .:::... .: :...:.:. .. .:: . : :. : . : :.. KIAA02 HSFRQPPEMV---PQQLGSLQCSALLPREKELACS----PHPPKLLQPWLETQPPVEQES 380 390 400 410 420 430 630 640 650 660 670 KIAA11 HSNP-GH---AGPFPVVSVHNTTINP-TSPTTATMA-NANRGPTSP-SVTAIELIPSVTN :. :. . : .: ... . ..:: : . ... : . ... .. :. KIAA02 TSQRLGQQLTSQPVCIVPPQDVQQGAHAQPTLQTPSIQVQFGHHQKLKLSHFQQQPQQQL 440 450 460 470 480 490 680 690 700 710 720 730 KIAA11 PENLPSLPDIPPIQLEDAGSSSLDNLL-SRYISGSHL--PPQPTSTMNPSPGPSALSPGS : : :: :: : .. : :.....:. :: :. ..: KIAA02 PPPPPPLPH-PPPPLPPPPQQPHPPLPPSQHLASSQHESPPGPACSQNMDIMHHKFELEE 500 510 520 530 540 740 750 760 770 780 790 KIAA11 SGLSNSHTPVRPPSTSSTGSRGSCGSSGRTAEKTSLSFKSDQVKVKQEPGTEDEICSFSG KIAA02 MQKDLELLLQAQQPSLQLSQTKSPQHLQQTIVGQINYIVRQPAPVQSQSQEETLQATDEP 550 560 570 580 590 600 1131 residues in 1 query sequences 1986374 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:09:39 2008 done: Thu Dec 18 15:09:40 2008 Total Scan time: 0.710 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]