hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-17434567/chunk_1/iprscan-20080501-17434567.nocrc
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Query sequence: KIAA1112
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00325                                                 205.6    4.4e-57   1
SM00326                                                  68.9    6.4e-16   1
SM00233                                                  57.1    2.2e-12   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00326     1/1     221   276 ..     1    58 []    68.9  6.4e-16
SM00325     1/1     312   491 ..     1   211 []   205.6  4.4e-57
SM00233     1/1     524   632 ..     1    82 []    57.1  2.2e-12

Alignments of top-scoring domains:
SM00326: domain 1 of 1, from 221 to 276: score 68.9, E = 6.4e-16
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnrtGkeG
                      + + Al+D+   +++EL Fk+GD+i+v + ++ +Ww+G++     eG
    KIAA1112   221    VCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVA--DGEG 265  

                   lfPsnYVeeie<-*
                   +fP+++V++     
    KIAA1112   266 WFPASFVRLRV    276  

SM00325: domain 1 of 1, from 312 to 491: score 205.6, E = 4.4e-57
                   *->vlkELlqTErnYVrdLkilvevflkpLkkeakssllpllspdevktl
                      v++E+l TEr+Y+++L+ + e++ ++++k+a+     ++s+++++t+
    KIAA1112   312    VINEILSTERDYIKHLRDICEGYVRQCRKRAD-----MFSEEQLRTI 353  

                   FgpNieeiyefHrrFLdeLeerveewllskdlKsernsviedsgerigdv
                   Fg Nie+iy++++ F ++Le+r +  +              ++  ++g++
    KIAA1112   354 FG-NIEDIYRCQKAFVKALEQRFNRER--------------PHLSELGAC 388  

                   FlklfsaeeffkiYseYcsnhpdalellkkLmkkkknpaFqkflkeiesk
                   Fl++   + +f+iYseYc+nhp+a   l+ L    k +++  f++ + + 
    KIAA1112   389 FLEH---QADFQIYSEYCNNHPNACVELSRLT---KLSKYVYFFEACRLL 432  

                   pncrsksearltLeslLikPvQRltkYpLLLkellkhtppdhedredLkk
                   + ++     + +L+ +L++PvQ ++kYpL L ellk+t+p h d++d++ 
    KIAA1112   433 QKMI-----DISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRDFKDVEA 477  

                   AleaikelasqvNe<-*
                   Al+a+k++a+ +Ne   
    KIAA1112   478 ALHAMKNVAQLINE    491  

SM00233: domain 1 of 1, from 524 to 632: score 57.1, E = 2.2e-12
                   *->vikeGwLlkks..k.swkkryfvLfngvLlyyksk.......kpkgs
                      +i++G L++ +++  + ++r f+Lf+++L+y+k++  +++   +kg+
    KIAA1112   524    LIYSGELTRVTqpQaKSQQRMFFLFDHQLIYCKKDllrrdvlYYKGR 570  

                   ipLsgcsvre.p.............cFeivt.dr..tlllqAeseeeree
                   ++++g++v++ +++++++ + + +++F+++ +  ++++ll+++ +e++++
    KIAA1112   571 LDMDGLEVVDlEdgkdrdlhvsiknAFRLHRgATgdSHLLCTRKPEQKQR 620  

                   Wvealqsaiaka<-*
                   W++a+ +  ++    
    KIAA1112   621 WLKAFAREREQV    632  

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