# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hh02687mrp1.fasta.huge -Q ../query/KIAA1105.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1105, 730 aa
 vs ./tmplib.24314 library

1986775 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 6.1865+/-0.00591; mu= 9.3662+/- 0.403
 mean_var=128.1604+/-30.313, 0's: 0 Z-trim: 1  B-trim: 0 in 0/40
 Lambda= 0.113291

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA2006  ( 1367 res)   ff02026                    (1367)  637 116.0 2.4e-26


>>KIAA2006  ( 1367 res)   ff02026                         (1367 aa)
 initn: 483 init1: 256 opt: 637  Z-score: 565.0  bits: 116.0 E(): 2.4e-26
Smith-Waterman score: 637;  28.843% identity (62.808% similar) in 527 aa overlap (12-529:845-1358)

                                  10        20        30        40 
KIAA11                    IGMKSPEEQLVCVPPQEAFPNDPRVINRQRSSDYQFPSSPF
                                     ::::   .  : . : :  . .... .. .
KIAA20 EDWGCSSWVPGMETSLPPGHWTAAVKKEEKCVPPYVQI-RDLHGILRTYA-NFSI-TKEL
          820       830       840       850        860         870 

              50        60         70         80        90         
KIAA11 TDTLKGTTEDDVLTGQVEEQC-VPAAEAEPPAVSET-TERTVLGEYNLFSRKIEEILKQK
        ::.. :..      .   .: .:.. .    :..  :. :.  ::  :..:... .:. 
KIAA20 KDTMR-TSHGLRRHPSFSANCGLPSSWTSTWQVADDLTQNTLDLEYLRFAHKLKQTIKNG
              880       890       900       910       920       930

     100       110        120       130       140       150        
KIAA11 NVSYVSRVSTPIFSTQEKMK-RLSEFIYSKTSKAGVQEFVDGLHEKLNTIIIKASAKGGN
       . .. :  :. .:  .   .  .. :  .: :.:   . .   .  : . ..... .  .
KIAA20 DSQH-SASSANVFPKESPTQISIGAFPSTKISEAPFLHPAPRSRSPLLVTVVESDPRPQG
               940       950       960       970       980         

      160       170         180       190       200       210      
KIAA11 LPPVSPNDSGAKIASNPLER--HVIPVSSSDFNNKHLLEPLCSDPLKDTNSDEQHSTSAL
        :  . . :.   .:.  ::  :   . .:. :  : .  .  . ::  ::  ..: . .
KIAA20 QPRRGYTASSLDSSSSWRERCSHNRDLRNSQRN--HTVS-FHLNKLK-YNSTVKESRNDI
     990      1000      1010      1020         1030       1040     

        220       230       240        250       260        270    
KIAA11 TEVEMNQPQHATELMVTSDHIVPGDMAREPVE-ETTKSPSDVNISAQPA-LSNFISQLEP
       . . .:.  . ...: .:....  :   . :  :.: .   . . .. :   ..: ..  
KIAA20 SLI-LNEYAEFNKVMKNSNQFIFQDKELNDVSGEATAQEMYLPFPGRSASYEDIIIDVCT
         1050      1060      1070      1080      1090      1100    

          280       290       300       310       320       330    
KIAA11 EVFNSLVKIMKDVQKNTVKFYIHEEEESVLCKEIKEYLIKLGNTECHPEQFLERRSKL-D
       ..  .: ...:.. :.:  ::. : :.. .  . :. : : :.:: .:..: .   .  :
KIAA20 NLHVKLRSVVKEACKSTFLFYLVETEDKSFFVRTKNLLRKGGHTEIEPQHFCQAFHREND
         1110      1120      1130      1140      1150      1160    

           340       350       360       370       380       390   
KIAA11 KLLIIIQNEDIAGFIHKIPGLVTLKKLPCVSFAGVDSLDDVKNHTYNELFVSGGFIVSDE
        :.:::.::::.. .:.::.:. ::..: : ::::::  :: .:::.::: .:::..::.
KIAA20 TLIIIIRNEDISSHLHQIPSLLKLKHFPSVIFAGVDSPGDVLDHTYQELFRAGGFVISDD
         1170      1180      1190      1200      1210      1220    

           400       410       420       430       440       450   
KIAA11 SILNPEVVTVENLKNFLTFLEELSTPEGKWQWKVHCKFQKKLKELGRLNAKALSLLTLLN
       .::  :.::. .::... .::.:.  .:.:.: .: . .:::::  :... : .   .:.
KIAA20 KIL--EAVTLVQLKEIIKILEKLNG-NGRWKWLLHYRENKKLKEDERVDSTAHKKNIMLK
           1230      1240       1250      1260      1270      1280 

           460       470        480       490       500       510  
KIAA11 VYQKKHLVEILSYHNCDSQTRNAPE-LDCLIRLQAQNIQQRHIVFLTEKNIKMLSSYTDN
        .:. ...:.: ::.:::.. .  : : ::. :: :.:. :  :.::.:       . .:
KIAA20 SFQSANIIELLHYHQCDSRSSTKAEILKCLLNLQIQHIDARFAVLLTDKPTIPREVFENN
            1290      1300      1310      1320      1330      1340 

            520       530       540       550       560       570  
KIAA11 GIVVATAEDFMQNFKNLVGYHNSITEENLPQLGANENLESQSALLENDEKDEEDMSLDSG
       ::.:. ...:..:....                                           
KIAA20 GILVTDVNNFIENIEKIAAPFRSSYW                                  
            1350      1360                                         




730 residues in 1 query   sequences
1986775 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:09:19 2008 done: Thu Dec 18 15:09:20 2008
 Total Scan time:  0.560 Total Display time:  0.030

Function used was FASTA [version 34.26.5 April 26, 2007]