hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-17213769/chunk_1/iprscan-20080501-17213769.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1099 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00105 187.3 1.4e-51 1 SM00233 71.9 8e-17 1 SM00173 11.2 9e-09 1 SM00248 39.1 5.8e-07 2 SM00175 -30.9 2.6e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00173 1/1 129 292 .. 1 167 [] 11.2 9e-09 SM00175 1/1 132 292 .. 1 172 [] -30.9 2.6e-06 SM00233 1/1 407 597 .. 1 82 [] 71.9 8e-17 SM00105 1/1 616 736 .. 1 139 [] 187.3 1.4e-51 SM00248 1/2 775 804 .. 1 30 [] 29.4 0.00049 SM00248 2/2 808 839 .. 1 30 [] 9.7 2.3e+02 Alignments of top-scoring domains: SM00173: domain 1 of 1, from 129 to 292: score 11.2, E = 9e-09 *->mreYKlVVlGgGGVGKSALTiQFiqghFvdeYDPTIEDS.....YrK ++e K+ ++G GKSAL+ + +g++v+ E S+++++++K KIAA1099 129 VPELKVGIVGNLASGKSALVHRYLTGTYVQ------EESpeggrFKK 169 qieiDgevalLDILDTAGQeEFsAMRdqYmRtGeGFlLVYSitsrqSFee +i++Dg+ +lL I D G E q+ + + V+S+ + SF+ KIAA1099 170 EIVVDGQSYLLLIRDEGGPPE-----AQFAMWVDAVIFVFSLEDEISFQT 214 ikkfreqIlRVKdrddvPivLVGNKcDLene...RqVsteEGkeLAkqln + ++ + + + ++P+vLVG D + ++R++ + +++L+++l+ KIAA1099 215 VYHYYSRMANYRNTSEIPLVLVGT-QDAISSanpRVIDDARARKLSNDLK 263 .cpFlEtSAKerinVdeaFydLVReirks<-* +c ++Et A + nV+ +F+d+ i + KIAA1099 264 rCTYYETCATYGLNVERVFQDVAQKIVAT 292 SM00175: domain 1 of 1, from 132 to 292: score -30.9, E = 2.6e-06 *->FKiilIGDSGVGKSsLLsRFtddkFsedsksTIGVDFktktievdGk +K+ ++G+ + GKS L++R+ ++++ ++ ++ G Fk k i vdG+ KIAA1099 132 LKVGIVGNLASGKSALVHRYLTGTYVQEESPEGG-RFK-KEIVVDGQ 176 rvKLQIWDTAGQERFRSiTssYYRG............AvGalLVYDiTnr L I R+++++++ + +++++V+ + ++ KIAA1099 177 SYLLLI-----------------RDeggppeaqfamwVDAVIFVFSLEDE 209 eSFenlknWlkelreyadpppenvvimLVGNK..sDLeeqRqVstEeaek SF+ + + ++ y + + ++ +LVG + + ++ R+++ +a+k KIAA1099 210 ISFQTVYHYYSRMANYRNT--SEIPLVLVGTQdaISSANPRVIDDARARK 257 ficDcAeehgllFifETSAKtntNVeeAFeelakkIlkr<-* + + + ++ ET A ++NVe +F+ +a+kI+++ KIAA1099 258 L---SNDLKRCTYY-ETCATYGLNVERVFQDVAQKIVAT 292 SM00233: domain 1 of 1, from 407 to 597: score 71.9, E = 8e-17 *->vikeGwLlkks....k.swkkryfvLfngvLlyyksk.......kpk +ik+G Llk+s+++ ++ wkk+y++L+++ +l y+++ ++ ++ + KIAA1099 407 PIKQGMLLKRSgkslNkEWKKKYVTLCDNGVLTYHPSlhdymqnVHG 453 gsipLsgcsvre.p.................................... ++i+L +v+++ +++++ + + ++++ ++ +++ ++ + +++++ KIAA1099 454 KEIDLLRTTVKVpGkrppratsacapisspktnglskdmsslhispnsdt 503 .................................................. + +++ ++++ ++ +++ +++++++ ++++++++++ ++ + ++ ++ KIAA1099 504 glgdsvcsspsissttspkldpppsphanrkkhrrkkstsnfkadglsgt 553 ........cFeivt.dr.tlllqAeseeereeWvealqsaiaka<-* ++ +++ F iv+ +++t+++ A + eer+ Wv+a++s i + KIAA1099 554 aeeqeenfEFIIVSlTGqTWHFEATTYEERDAWVQAIESQILAS 597 SM00105: domain 1 of 1, from 616 to 736: score 187.3, E = 1.4e-51 *->eealqlLRsikpgNkkCfDCGavpnPtWaSvnlGvflCieCSGiHRs + alq++R+++ gN++C+DC+ nP WaS+nlG++ CieCSGiHR+ KIAA1099 616 AMALQSIRNMR-GNSHCVDCET-QNPNWASLNLGALMCIECSGIHRN 660 LfGvHiSkVnvRSltLDtWteeeLrllesckgGNenansfwesnlddfsl L G+H+S+V RSl+LD+W+ e ++++ +GNe ans+we + + KIAA1099 661 L-GTHLSRV--RSLDLDDWPIELIKVMS--SIGNELANSVWEESSQGRTK 705 kpkdsdaaasvKCeddrqkyesfiaaKYeeklfrvdkesaee<-* ++ ds r+++e +i+aKYe+klf + ++++ e KIAA1099 706 PSVDS----------TREEKERWIRAKYEQKLF-LAPLPCTE 736 SM00248: domain 1 of 2, from 775 to 804: score 29.4, E = 0.00049 *->dGrTpLHlAaengnlevvklLldkgadina<-* dGrT+LHlA+++gn+ +++lL+ +g+d++a KIAA1099 775 DGRTALHLACRKGNVVLAQLLIWYGVDVTA 804 SM00248: domain 2 of 2, from 808 to 839: score 9.7, E = 2.3e+02 *->dGrTpLHlAaengnlevvklLldkga..dina<-* +G+T+L +A + + e++ Ll++g +++ + KIAA1099 808 HGNTALAYARQASSQECIDVLLQYGCpdERFV 839 //