hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-17195531/chunk_1/iprscan-20080501-17195531.nocrc
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Query sequence: KIAA1098
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00589                                                  77.2      2e-18   1
SM00449                                                  45.3      8e-09   1
SM00184                                                  41.5    1.1e-07   1
SM00336                                                  31.8    9.6e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00184    1/1      32    71 ..     1    23 []    41.5  1.1e-07
SM00336    1/1     107   148 ..     1    51 []    31.8  9.6e-05
SM00589    1/1     312   363 ..     1    56 []    77.2    2e-18
SM00449    1/1     364   495 ..     1   145 []    45.3    8e-09

Alignments of top-scoring domains:
SM00184: domain 1 of 1, from 32 to 71: score 41.5, E = 1.1e-07
                   *->CpICle....pvvlpCgH.FCr.Ci...........CPlC<-*
                      C++C+++ +++v+l CgH+FCr+C+++ ++ + +++CP+C   
    KIAA1098    32    CAVCYDpfrdAVTLRCGHnFCRgCVsrcwevqvsptCPVC    71   

SM00336: domain 1 of 1, from 107 to 148: score 31.8, E = 9.6e-05
                   *->eraplCeeHgdeepaeffCveedgallCrdCdeageHqanklfrgHr
                      +  ++C  H+    + +fC  ed +llC+ C   + H      +gHr
    KIAA1098   107    RFSRVCRLHR--GQLSLFC-LEDKELLCCSCQADPRH------QGHR 144  

                   vvll<-*
                   v+++   
    KIAA1098   145 VQPV    148  

SM00589: domain 1 of 1, from 312 to 363: score 77.2, E = 2e-18
                   *->avdvtLDPdTAhpkLlLSeDrrsVrygdtkqkGsnlpdnPeRFdsyp
                      +v+ ++DP+TA ++L++S+D++sV++++++    +  +nPeRF+s+p
    KIAA1098   312    SVPFSFDPNTAAGWLSVSDDLTSVTNHGYR----VQVENPERFSSAP 354  

                   cVLGsegFs<-*
                   c LGs+ Fs   
    KIAA1098   355 CLLGSRVFS    363  

SM00449: domain 1 of 1, from 364 to 495: score 45.3, E = 8e-09
                   *->sGkhYfEVevdtggdkghwrvGvatksvhlypfkvrrkrkggvsllG
                      +G h +EV  ++ ++   wrvGv++                ++   G
    KIAA1098   364    QGSHAWEVALGGLQS---WRVGVVRVR-------------QDSGAEG 394  

                   edkgSwgyrgdggkkyhasef......geeyglpfqep.....gDviGcf
                      +S +y++++   ++ +++++ +++++ +++p ++p     ++++++ 
    KIAA1098   395 HS-HS-CYHDTRSGFWYVCRTqgvegdHCVTSDPATSPlvlaiPRRLRVE 442  

                   lDleaggStisFykNGkyLgdshilaffdvtfsgpLyPavslgstdgGge
                   l +e+g  ++sFy +  +++    l++f++ f+  ++P+++lg + g g 
    KIAA1098   443 LECEEG--ELSFYDAERHCH----LYTFHARFG-EVRPYFYLGGARGAGP 485  

                   svrlnfGp.p<-*
                     +l+++p +   
    KIAA1098   486 PEPLRICPlH    495  

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