hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-16355049/chunk_1/iprscan-20080501-16355049.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1072 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00332 252.2 4.2e-71 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00332 1/1 223 490 .. 1 338 [] 252.2 4.2e-71 Alignments of top-scoring domains: SM00332: domain 1 of 1, from 223 to 490: score 252.2, E = 4.2e-71 *->es.sgknlglryglgessmqgwrkpmEDahvirp............. ++++ ++l+y +++++++ r++mED hv++p+ + + +++++ KIAA1072 223 DFpLRRRPQLYYETSIHAIKNMRRKMEDKHVCIPdfnmlfnledqee 269 ..ffgVfDGHGGseaakflsknlheilaeelsfdkdeslkeneelkdepe + +f+VfDGHGG +aa ++s +lh +l++++ f+ KIAA1072 270 qaYFAVFDGHGGVDAAIYASIHLHVNLVRQEMFP---------------- 303 sserlngdksledveealrkaFlrtdeei............sTAvvalir +d+ eal +aF+ tde++ ++ +++ + ++T vv +ir KIAA1072 304 -----------HDPAEALCRAFRVTDERFvqkaareslrcgTTGVVTFIR 342 gnklyvANvGDSRavLcrngkdswegvrtysavqLteDHkpsnedEreRI gn l+vA+vGDS+++L r+g+ av+L + Hkp++edE++RI KIAA1072 343 GNMLHVAWVGDSQVMLVRKGQ----------AVELMKPHKPDREDEKQRI 382 eaaGGevepidrefvsngggvvwRvnGvvisLavsRalGDfelKkkedel ea+GG v + + RvnG+ L vsRa+GD e K KIAA1072 383 EALGGCVV-----WFGAW-----RVNGS---LSVSRAIGDAEHK------ 413 ieenrlyekfdprlpgkepyvsaePevtvvelsqtlvptedddfliLASD py+ + + ++ l + d liLA+D KIAA1072 414 ------------------PYICGDADSASTVL------DGTEDYLILACD 439 GlWDvlsnqeavdivrkhlrkgddkevksaaqelaradslrskkhndpke G +D ++++eav +v +hl ++++d ++ KIAA1072 440 GFYDTVNPDEAVKVVSDHL----------------------KENNGDSSM 467 aaklLvdlAl....kDNiTvvvv<-* +a +Lv A++ +++DNiTv+vv KIAA1072 468 VAHKLVASARdagsSDNITVIVV 490 //