# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hj06360.fasta.huge -Q ../query/KIAA1072.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1072, 759 aa
 vs ./tmplib.24314 library

1986746 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 11.0462+/-0.00867; mu= -14.3702+/- 0.586
 mean_var=378.1998+/-92.670, 0's: 0 Z-trim: 3  B-trim: 0 in 0/40
 Lambda= 0.065950

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0015  ( 480 res)   ha00478                     ( 480) 1130 121.7 1.7e-28


>>KIAA0015  ( 480 res)   ha00478                          (480 aa)
 initn: 1163 init1: 1070 opt: 1130  Z-score: 603.4  bits: 121.7 E(): 1.7e-28
Smith-Waterman score: 1244;  47.124% identity (70.133% similar) in 452 aa overlap (106-541:39-477)

          80        90       100       110         120       130   
KIAA10 TVAATEEGDQEQDPEPEEEAAVEGEEEEEGAATAAAAPGH--SAVPPPPPQLPPLPPLP-
                                     :. :  .::   . .   :  : :  ::: 
KIAA00 AWRPSCPGLAAGPRDALGMSSGAPQKSSPMASGAEETPGFLDTLLQDFPALLNPEDPLPW
       10        20        30        40        50        60        

            140       150       160       170       180        190 
KIAA10 RPLSERITREEVEGESLDLCLQQLYKYNCPSFLAAALARATSDEVLQSDLSAHY-IPKET
       .  .  ...::::::  .: .  : . . :  ::::::. . ...::.:::    .:.: 
KIAA00 KAPGTVLSQEEVEGELAELAMGFLGSRKAPPPLAAALAHEAVSQLLQTDLSEFRKLPREE
       70        80        90       100       110       120        

                   200          210       220       230        240 
KIAA10 ------DGTEGTVEIETV---KLARSVFSKLHEICCSWVKDFPLRRRP-QLYYETSIHAI
             :  :  . .  .   .::.: :..: :.  .: :. ::  :  :  . .:::::
KIAA00 EEEEEDDDEEEKAPVTLLDAQSLAQSFFNRLWEVAGQWQKQVPLAARASQRQWLVSIHAI
      130       140       150       160       170       180        

             250       260       270       280       290       300 
KIAA10 KNMRRKMEDKHVCIPDFNMLFNLEDQEEQAYFAVFDGHGGVDAAIYASIHLHVNLVRQEM
       .: ::::::.:: .:.::.::.: :  ..::::::::::::::: ::..:.:.: .::  
KIAA00 RNTRRKMEDRHVSLPSFNQLFGLSDPVNRAYFAVFDGHGGVDAARYAAVHVHTNAARQPE
      190       200       210       220       230       240        

             310       320       330       340       350       360 
KIAA10 FPHDPAEALCRAFRVTDERFVQKAARESLRCGTTGVVTFIRGNMLHVAWVGDSQVMLVRK
       .: ::  :: .::: ::. :..:: :: :. ::::: ..: :  :::::.:::::.::..
KIAA00 LPTDPEGALREAFRRTDQMFLRKAKRERLQSGTTGVCALIAGATLHVAWLGDSQVILVQQ
      250       260       270       280       290       300        

             370       380       390       400       410       420 
KIAA10 GQAVELMKPHKPDREDEKQRIEALGGCVVWFGAWRVNGSLSVSRAIGDAEHKPYICGDAD
       ::.:.::.::.:.:.::: ::::::: :  .  :::::.:.:::::::. .:::. :.::
KIAA00 GQVVKLMEPHRPERQDEKARIEALGGFVSHMDCWRVNGTLAVSRAIGDVFQKPYVSGEAD
      310       320       330       340       350       360        

             430       440       450       460       470       480 
KIAA10 SASTVLDGTEDYLILACDGFYDTVNPDEAVKVVSDHLKENNGDSSMVAHKLVASARDAGS
       .:: .: :.::::.::::::.:.:  .:.: .:..:: ...:..  ::..:::.::. ::
KIAA00 AASRALTGSEDYLLLACDGFFDVVPHQEVVGLVQSHLTRQQGSGLRVAEELVAAARERGS
      370       380       390       400       410       420        

             490       500       510       520       530           
KIAA10 SDNITVIVVFLRDMNKAVNVSEESDWTENSFQGGQEDGGDDKENHGECKRP--WPQHQCS
        :::::.::::::              .. ..::..  :: . .  .   :   :. . .
KIAA00 HDNITVMVVFLRD-------------PQELLEGGNQGEGDPQAEGRRQDLPSSLPEPETQ
      430       440                    450       460       470     

     540       550       560       570       580       590         
KIAA10 APADLGYDGRVDSFTDRTSLSPGSQINVLEDPGYLDLTQIEASKPHSAQFLLPVEMFGPG
       ::                                                          
KIAA00 APPRS                                                       
         480                                                       




759 residues in 1 query   sequences
1986746 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:08:01 2008 done: Thu Dec 18 15:08:02 2008
 Total Scan time:  0.560 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]