hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16205173/chunk_1/iprscan-20080501-16205173.nocrc
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Query sequence: KIAA1063
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00443.19.fs Ubiquitin carboxyl-terminal hydrolase          269.7    1.5e-86   1
PF00443.19.ls Ubiquitin carboxyl-terminal hydrolase          271.5    1.5e-78   1
PF02148.9.fs Zn-finger in ubiquitin-hydrolases and other     22.2    1.3e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02148.9.fs   1/1     131   200 ..     1    82 []    22.2  1.3e-05
PF00443.19.fs   1/1     241   585 ..     1   318 []   269.7  1.5e-86
PF00443.19.ls   1/1     241   585 ..     1   318 []   271.5  1.5e-78

Alignments of top-scoring domains:
PF02148.9.fs: domain 1 of 1, from 131 to 200: score 22.2, E = 1.3e-05
                   *->CvstCgl.tenlWlCLtCGqvgCGryqylgdGgngHaleHyretgHp
                      C  +Cg++ ++l  CL+C + gC  +        +H  eH ++ +H 
    KIAA1063   131    C-HVCGVhLNRLHSCLYCVFFGCFTK--------KHIHEHAKAKRHN 168  

                   lavklktqstwcyacdaYvhqeddeedalDgkylvd<-*
                   la++l  +  +c+ c++Y+++ d e   +  +  ++   
    KIAA1063   169 LAIDLMYGGIYCFLCQDYIYDKDMEI--IAKE--EQ    200  

PF00443.19.fs: domain 1 of 1, from 241 to 585: score 269.7, E = 1.5e-86
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->pgptGLvNlGNTCYmNSvLQcLfsipplrdyflsdsyeseinesnpl
                       g++GL+NlGNTC+mN+++Q+L+++p lrd+flsd+++     +  +
    KIAA1063   241    IGLRGLINLGNTCFMNCIVQALTHTPLLRDFFLSDRHR-----CEMQ 282  

                RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   gskgsllcaladLfnalqsg.yksvapsplkflkqfkltlgkineefsgy
                   +++ +l+c+++ Lf++++sg++++  p +l++      +++  ++ + gy
    KIAA1063   283 SPSSCLVCEMSSLFQEFYSGhRSPHIPYKLLH------LVWTHARHLAGY 326  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   mQQDAhEFllfLLdgLhedlnrvnkkpytepessdkrpdkaaeawknhlt
                    QQDAhEFl   Ld Lh+ +++    +++                 n+++
    KIAA1063   327 EQQDAHEFLIAALDVLHRHCKGDDNGKKA-----------------NNPN 359  

                RF xxxxxxxxxxxxxxxx                                  
                   rnesiitdlFqGqlks..................................
                    + +ii+++F+G l s+ +++ +++ +++ ++  + + + ++++++  + 
    KIAA1063   360 HCNCIIDQIFTGGLQSdvtcqvchgvsttidpfwdisldlpgsstpfwpl 409  

                RF                                                   
                   ..................................................
                   +++++++  +++++ +++++ +++ ++ +++++ +++ + +++++++ ++
    KIAA1063   410 spgsegnvvngeshvsgtttltdclrrftrpehlgssakikcsgchsyqe 459  

                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   ...klkikrLPpvLiihLKRFsyngetglnkKiddkVefPleLdlssycn
                   ++++l++k+LP v ++hLKRF+ +    l+ Ki + V+fPleLd++++++
    KIAA1063   460 stkQLTMKKLPIVACFHLKRFEHSAK--LRRKITTYVSFPLELDMTPFMA 507  

                RF xxxxxxxxxxxx xx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   aelkekevlrkd.ek.ieklkeerqrdedgnneeepeeeedneegenppt
                   +++    + r ++ ++ ++ + +                        ++ 
    KIAA1063   508 SSK----ESRMNgQYqQPTDSLN------------------------NDN 529  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   kYeLyaVvvHsGsslssGHYiayikkkkengkWykfDDekVsevteeevl
                   kY+L+aVv+H G +l+sGHY+++i  +  +++W+k+DD  ++ ++  +v 
    KIAA1063   530 KYSLFAVVNHQG-TLESGHYTSFI--RQHKDQWFKCDDAIITKASIKDV- 575  

                RF xxxxxxxxxxx   
                   ersssAYiLFY<-*
                    + s++Y+LFY   
    KIAA1063   576 -LDSEGYLLFY    585  

PF00443.19.ls: domain 1 of 1, from 241 to 585: score 271.5, E = 1.5e-78
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->pgptGLvNlGNTCYmNSvLQcLfsipplrdyflsdsyeseinesnpl
                       g++GL+NlGNTC+mN+++Q+L+++p lrd+flsd+++     +  +
    KIAA1063   241    IGLRGLINLGNTCFMNCIVQALTHTPLLRDFFLSDRHR-----CEMQ 282  

                RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   gskgsllcaladLfnalqsg.yksvapsplkflkqfkltlgkineefsgy
                   +++ +l+c+++ Lf++++sg++++  p +l++      +++  ++ + gy
    KIAA1063   283 SPSSCLVCEMSSLFQEFYSGhRSPHIPYKLLH------LVWTHARHLAGY 326  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   mQQDAhEFllfLLdgLhedlnrvnkkpytepessdkrpdkaaeawknhlt
                    QQDAhEFl   Ld Lh+ +++    +++                 n+++
    KIAA1063   327 EQQDAHEFLIAALDVLHRHCKGDDNGKKA-----------------NNPN 359  

                RF xxxxxxxxxxxxxxxx                                  
                   rnesiitdlFqGqlks..................................
                    + +ii+++F+G l s+ +++ +++ +++ ++  + + + ++++++  + 
    KIAA1063   360 HCNCIIDQIFTGGLQSdvtcqvchgvsttidpfwdisldlpgsstpfwpl 409  

                RF                                                   
                   ..................................................
                   +++++++  +++++ +++++ +++ ++ +++++ +++ + +++++++ ++
    KIAA1063   410 spgsegnvvngeshvsgtttltdclrrftrpehlgssakikcsgchsyqe 459  

                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   ...klkikrLPpvLiihLKRFsyngetglnkKiddkVefPleLdlssycn
                   ++++l++k+LP v ++hLKRF+ +    l+ Ki + V+fPleLd++++++
    KIAA1063   460 stkQLTMKKLPIVACFHLKRFEHSAK--LRRKITTYVSFPLELDMTPFMA 507  

                RF xxxxxxxxxxxx xx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   aelkekevlrkd.ek.ieklkeerqrdedgnneeepeeeedneegenppt
                   +++    + r ++ ++ ++ + +                        ++ 
    KIAA1063   508 SSK----ESRMNgQYqQPTDSLN------------------------NDN 529  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   kYeLyaVvvHsGsslssGHYiayikkkkengkWykfDDekVsevteeevl
                   kY+L+aVv+H G +l+sGHY+++i  +  +++W+k+DD  ++ ++  +v 
    KIAA1063   530 KYSLFAVVNHQG-TLESGHYTSFI--RQHKDQWFKCDDAIITKASIKDV- 575  

                RF xxxxxxxxxxx   
                   ersssAYiLFY<-*
                    + s++Y+LFY   
    KIAA1063   576 -LDSEGYLLFY    585  

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