hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-16154686/chunk_1/iprscan-20080501-16154686.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1060 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00211.10.ls Adenylate and Guanylate cyclase catalyt 580.0 2e-171 2 PF00211.10.fs Adenylate and Guanylate cyclase catalyt 576.4 2.5e-170 2 PF06327.4.ls Domain of Unknown Function (DUF1053) 211.0 2.4e-60 1 PF06327.4.fs Domain of Unknown Function (DUF1053) 209.1 9.3e-60 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00211.10.ls 1/2 77 261 .. 1 223 [] 244.5 2.1e-70 PF00211.10.fs 1/2 77 261 .. 1 223 [] 242.7 7.3e-70 PF06327.4.fs 1/1 273 396 .. 1 127 [] 209.1 9.3e-60 PF06327.4.ls 1/1 273 396 .. 1 127 [] 211.0 2.4e-60 PF00211.10.fs 2/2 674 874 .. 1 223 [] 333.7 2.9e-97 PF00211.10.ls 2/2 674 874 .. 1 223 [] 335.5 8.2e-98 Alignments of top-scoring domains: PF00211.10.ls: domain 1 of 2, from 77 to 261: score 244.5, E = 2.1e-70 *->vyaqrydnVtilFaDIvGFTalssrhsvNngpeevvrlLNdlytrFD +y +r+ nV+il aDIvGFT+l+s +s p e+v +LN+l+++FD KIAA1060 77 LYVKRHTNVSILYADIVGFTRLASDCS----PGELVHMLNELFGKFD 119 eLldehkfgvyKvKTIGDaYMvasGlppaadqtkLakklqldsaaHaakl ++ e+ + ++K++GD+Y+++sGlp + Ha + KIAA1060 120 QIAKEN--ECMRIKILGDCYYCVSGLPIS-------------LPNHAKNC 154 admALdmveaiqevnvehanrepPtvLyrGlrvRiGiHtGpVvaGviGlt ++m+Ldm eai++v+ +++ + +++R+G+H+G V++GviG KIAA1060 155 VKMGLDMCEAIKKVRDATGV--D-------INMRVGVHSGNVLCGVIG-- 193 akrprYdvwGdTVNlASRmEStGvpgsekIhvseetyrlLkeeesfefef +++++Ydvw+++V+lA+ mE++Gvpg ++h+s t + L++ + +e + KIAA1060 194 LQKWQYDVWSHDVTLANHMEAGGVPG--RVHISSVTLEHLNGAYKVEEG- 240 aleprgeveVkGkgkpGeietYfLkg<-* g++ + +++ ++tYf+++ KIAA1060 241 ----DGDIRDPYLKQH-LVKTYFVIN 261 PF00211.10.fs: domain 1 of 2, from 77 to 261: score 242.7, E = 7.3e-70 *->vyaqrydnVtilFaDIvGFTalssrhsvNngpeevvrlLNdlytrFD +y +r+ nV+il aDIvGFT+l+s +s p e+v +LN+l+++FD KIAA1060 77 LYVKRHTNVSILYADIVGFTRLASDCS----PGELVHMLNELFGKFD 119 eLldehkfgvyKvKTIGDaYMvasGlppaadqtkLakklqldsaaHaakl ++ e+ + ++K++GD+Y+++sGlp + Ha + KIAA1060 120 QIAKEN--ECMRIKILGDCYYCVSGLPIS-------------LPNHAKNC 154 admALdmveaiqevnvehanrepPtvLyrGlrvRiGiHtGpVvaGviGlt ++m+Ldm eai++v+ +++ + +++R+G+H+G V++GviG KIAA1060 155 VKMGLDMCEAIKKVRDATGV--D-------INMRVGVHSGNVLCGVIG-- 193 akrprYdvwGdTVNlASRmEStGvpgsekIhvseetyrlLkeeesfefef +++++Ydvw+++V+lA+ mE++Gvpg ++h+s t + L++ + +e + KIAA1060 194 LQKWQYDVWSHDVTLANHMEAGGVPG--RVHISSVTLEHLNGAYKVEEG- 240 aleprgeveVkGkgkpGeietYfLkg<-* g++ + +++ ++tYf+++ KIAA1060 241 ----DGDIRDPYLKQH-LVKTYFVIN 261 PF06327.4.fs: domain 1 of 1, from 273 to 396: score 209.1, E = 9.3e-60 *->kglkaelesltdrrsnsmtrylesWgPerPFaNLnsresglkaatsi ++++++l+++++r+s++mtrylesWg+++PFa+L++r+s+++++ +i KIAA1060 273 FRPRHTLDGAKMRASVRMTRYLESWGAAKPFAHLHHRDSMTTENGKI 319 giddkpkhrvsaqvrtnpelhskKgrdEldEiDefieqaIdirSndklCw +++d+p+ ++++q+rt +++++kK+++ +E++e+++qaId+++++k+ w KIAA1060 320 STTDVPMGQHNFQNRTLRTKSQKKRFE--EELNERMIQAIDGINAQKQ-W 366 kRrEhlnpftLtFkdkslEkKYsqlrdprF<-* +++E++++++L+F++k lEk+Y+++++p+F KIAA1060 367 LKSEDIQRISLLFYNKVLEKEYRATALPAF 396 PF06327.4.ls: domain 1 of 1, from 273 to 396: score 211.0, E = 2.4e-60 *->kglkaelesltdrrsnsmtrylesWgPerPFaNLnsresglkaatsi ++++++l+++++r+s++mtrylesWg+++PFa+L++r+s+++++ +i KIAA1060 273 FRPRHTLDGAKMRASVRMTRYLESWGAAKPFAHLHHRDSMTTENGKI 319 giddkpkhrvsaqvrtnpelhskKgrdEldEiDefieqaIdirSndklCw +++d+p+ ++++q+rt +++++kK+++ +E++e+++qaId+++++k+ w KIAA1060 320 STTDVPMGQHNFQNRTLRTKSQKKRFE--EELNERMIQAIDGINAQKQ-W 366 kRrEhlnpftLtFkdkslEkKYsqlrdprF<-* +++E++++++L+F++k lEk+Y+++++p+F KIAA1060 367 LKSEDIQRISLLFYNKVLEKEYRATALPAF 396 PF00211.10.fs: domain 2 of 2, from 674 to 874: score 333.7, E = 2.9e-97 *->vyaqrydnVtilFaDIvGFTalssrhsvNngpeevvrlLNdlytrFD +y+q+yd+V+++Fa+I++F +++++++vN++++e++rlLN+++++FD KIAA1060 674 LYHQSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFD 720 eLldehkf.gvyKvKTIGDaYMvasGlppaadqt..........kLakkl +Ll+++kf+gv+K+KTIG++YM+a Gl+ ++++++++++++ KIAA1060 721 DLLSKPKFsGVEKIKTIGSTYMAATGLSA----VpsqehsqepeR----- 761 qldsaaHaakladmALdmveaiqevnvehanrepPtvLyrGlrvRiGiHt +++H+ +++++A+++v ++ +n++++n + +++R+Gi++ KIAA1060 762 ---QYMHIGTMVEFAFALVGKLDAINKHSFN--D-------FKLRVGINH 799 GpVvaGviGltakrprYdvwGdTVNlASRmEStGvpgsekIhvseetyrl GpV+aGviG a++p+Yd+wG+TVN+ASRm+StGv kI+v+eet + KIAA1060 800 GPVIAGVIG--AQKPQYDIWGNTVNVASRMDSTGVLD--KIQVTEETSLV 845 LkeeesfefefaleprgeveVkGkgkpGeietYfLkg<-* L++++ +++++ rg+++VkGkg ++tYf++ KIAA1060 846 LQTLG-YTCTC----RGIINVKGKGD---LKTYFVNT 874 PF00211.10.ls: domain 2 of 2, from 674 to 874: score 335.5, E = 8.2e-98 *->vyaqrydnVtilFaDIvGFTalssrhsvNngpeevvrlLNdlytrFD +y+q+yd+V+++Fa+I++F +++++++vN++++e++rlLN+++++FD KIAA1060 674 LYHQSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFD 720 eLldehkf.gvyKvKTIGDaYMvasGlppaadqt..........kLakkl +Ll+++kf+gv+K+KTIG++YM+a Gl+ ++++++++++++ KIAA1060 721 DLLSKPKFsGVEKIKTIGSTYMAATGLSA----VpsqehsqepeR----- 761 qldsaaHaakladmALdmveaiqevnvehanrepPtvLyrGlrvRiGiHt +++H+ +++++A+++v ++ +n++++n + +++R+Gi++ KIAA1060 762 ---QYMHIGTMVEFAFALVGKLDAINKHSFN--D-------FKLRVGINH 799 GpVvaGviGltakrprYdvwGdTVNlASRmEStGvpgsekIhvseetyrl GpV+aGviG a++p+Yd+wG+TVN+ASRm+StGv kI+v+eet + KIAA1060 800 GPVIAGVIG--AQKPQYDIWGNTVNVASRMDSTGVLD--KIQVTEETSLV 845 LkeeesfefefaleprgeveVkGkgkpGeietYfLkg<-* L++++ +++++ rg+++VkGkg ++tYf++ KIAA1060 846 LQTLG-YTCTC----RGIINVKGKGD---LKTYFVNT 874 //