hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16090455/chunk_1/iprscan-20080501-16090455.nocrc
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Query sequence: KIAA1056
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 121.7      8e-32   6

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/6     245   267 ..     1    23 []    13.5      9.4
SM00355      2/6     461   484 ..     1    23 []    24.3    0.016
SM00355      3/6     516   540 ..     1    23 []    29.8  0.00037
SM00355      4/6     577   601 ..     1    23 []    19.8     0.38
SM00355      5/6     766   790 ..     1    23 []    14.4      7.4
SM00355      6/6     829   853 ..     1    23 []    19.8     0.38

Alignments of top-scoring domains:
SM00355: domain 1 of 6, from 245 to 267: score 13.5, E = 9.4
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C + C   fs ++a+  H ++H   
    KIAA1056   245    WLCLL-CRLGFSKPqAFMDHTQSH    267  

SM00355: domain 2 of 6, from 461 to 484: score 24.3, E = 0.016
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      +kCp+ C+++++ ++ L  Hm+++H   
    KIAA1056   461    LKCPK-CNWHYKYQqTLDVHMQeKH    484  

SM00355: domain 3 of 6, from 516 to 540: score 29.8, E = 0.00037
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                      y+C++ C++s+++k++L  Hm++++H   
    KIAA1056   516    YRCDV-CNYSTTTKgNLSIHMQsdKH    540  

SM00355: domain 4 of 6, from 577 to 601: score 19.8, E = 0.38
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                      ++C++ C++ ++  ++L+ Hm +++H   
    KIAA1056   577    WQCKV-CSYETNISrNLRIHMTseKH    601  

SM00355: domain 5 of 6, from 766 to 790: score 14.4, E = 7.4
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                      ++C++ C + +  k +++ H+++++H   
    KIAA1056   766    HRCKL-CCYGTQLKaNFQLHLKtdKH    790  

SM00355: domain 6 of 6, from 829 to 853: score 19.8, E = 0.38
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                      ++C+i C++  +sk+ ++ H r+  H   
    KIAA1056   829    LRCNI-CDFESNSKeKMQLHARgaAH    853  

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