hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-15432931/chunk_1/iprscan-20080501-15432931.nocrc
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Query sequence: KIAA1041
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00339                                                 182.7    3.6e-50   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00339    1/1      96   186 ..     1    99 []   182.7  3.6e-50

Alignments of top-scoring domains:
SM00339: domain 1 of 1, from 96 to 186: score 182.7, E = 3.6e-50
                   *->neKPPySYiaLIamAIlsSPekrLTLseIYkwImdnFPYYrenkasn
                        KPPySY++LI+ AI sSP k++TLseIY+wI dnFPYYre++   
    KIAA1041    96    DGKPPYSYASLITFAINSSPKKKMTLSEIYQWICDNFPYYREAGS-- 140  

                   sagWqvNSIRHNLSLNdcFvKvprdkegdrpgKGsyWtldPdaeedmfen
                     gW+ NSIRHNLSLN+cF Kvpr  ++d+pgKGsyW++d + + +    
    KIAA1041   141 --GWK-NSIRHNLSLNKCFLKVPR--SKDDPGKGSYWAIDTNPK-EDALP 184  

                   gs<-*
                    +   
    KIAA1041   185 TR    186  

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