hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-15382768/chunk_1/iprscan-20080501-15382768.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1038 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00009.17.ls Elongation factor Tu GTP binding domain 297.2 2.8e-86 1 PF00009.17.fs Elongation factor Tu GTP binding domain 295.6 8.8e-86 1 PF03143.7.ls Elongation factor Tu C-terminal domain 128.9 1.3e-35 1 PF03143.7.fs Elongation factor Tu C-terminal domain 126.9 5.2e-35 1 PF03144.15.fs Elongation factor Tu domain 2 52.5 1.2e-13 1 PF03144.15.ls Elongation factor Tu domain 2 54.4 3.5e-13 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00009.17.fs 1/1 70 293 .. 1 299 [] 295.6 8.8e-86 PF00009.17.ls 1/1 70 293 .. 1 299 [] 297.2 2.8e-86 PF03144.15.fs 1/1 314 381 .. 1 75 [] 52.5 1.2e-13 PF03144.15.ls 1/1 314 381 .. 1 75 [] 54.4 3.5e-13 PF03143.7.ls 1/1 387 495 .. 1 112 [] 128.9 1.3e-35 PF03143.7.fs 1/1 387 495 .. 1 112 [] 126.9 5.2e-35 Alignments of top-scoring domains: PF00009.17.fs: domain 1 of 1, from 70 to 293: score 295.6, E = 8.8e-86 *->krhrNigiiGHVDHGKTTLtdrLlyytgaisertleklegeakegge k+ +N+++iGHVD+GK+TL++++ly +g i +rt+ k+e e+k++g KIAA1038 70 KQLLNLVVIGHVDAGKSTLMGHMLYLLGNINKRTMHKYEQESKKAG- 115 rkgsfklaaviDkmeeEreRGITIksahvsfewkdededgeteakpgkkr k+sf +a+v+D + eEreRG+T++++ ++fe KIAA1038 116 -KASFAYAWVLDETGEERERGVTMDVGMTKFE------------------ 146 gnetTekrhiniIDTPGHvDFtkevirGlaqaDGAiLVVdAveGvmp.Gf T + +i++ D+PGH DF+ ++i+G+aqaD A+LVVdA G+++ Gf KIAA1038 147 ----TTTKVITLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEaGF 192 .k.GQTrehlrlArqlgvppiilvVaiNKmDrvgaelklpdvpeelyeel + +GQTreh +l r lgv +l+Va+NKmD v+ + +e+++e+ KIAA1038 193 eTgGQTREHGLLVRSLGVT--QLAVAVNKMDQVN-------WQQERFQEI 233 eeevrellkpIgedfgvidlilaevaeddelmeyylegdeipiipiSall ++ +lk ++ ++++ +ip S+l KIAA1038 234 TGKLGHFLKQ-----------------------AGFKESDVGFIPTSGLS 260 gdnidelsiknkLkkddlslvPwykgiSalknkgrdrgaiptLLeaiddy g+n++ +s+++ +l++wykg +LLe id+ KIAA1038 261 GENLITRSQSS-------ELTKWYKG--------------LCLLEQIDS- 288 lPsPe<-* + +P+ KIAA1038 289 FKPPQ 293 PF00009.17.ls: domain 1 of 1, from 70 to 293: score 297.2, E = 2.8e-86 *->krhrNigiiGHVDHGKTTLtdrLlyytgaisertleklegeakegge k+ +N+++iGHVD+GK+TL++++ly +g i +rt+ k+e e+k++g KIAA1038 70 KQLLNLVVIGHVDAGKSTLMGHMLYLLGNINKRTMHKYEQESKKAG- 115 rkgsfklaaviDkmeeEreRGITIksahvsfewkdededgeteakpgkkr k+sf +a+v+D + eEreRG+T++++ ++fe KIAA1038 116 -KASFAYAWVLDETGEERERGVTMDVGMTKFE------------------ 146 gnetTekrhiniIDTPGHvDFtkevirGlaqaDGAiLVVdAveGvmp.Gf T + +i++ D+PGH DF+ ++i+G+aqaD A+LVVdA G+++ Gf KIAA1038 147 ----TTTKVITLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEaGF 192 .k.GQTrehlrlArqlgvppiilvVaiNKmDrvgaelklpdvpeelyeel + +GQTreh +l r lgv +l+Va+NKmD v+ + +e+++e+ KIAA1038 193 eTgGQTREHGLLVRSLGVT--QLAVAVNKMDQVN-------WQQERFQEI 233 eeevrellkpIgedfgvidlilaevaeddelmeyylegdeipiipiSall ++ +lk ++ ++++ +ip S+l KIAA1038 234 TGKLGHFLKQ-----------------------AGFKESDVGFIPTSGLS 260 gdnidelsiknkLkkddlslvPwykgiSalknkgrdrgaiptLLeaiddy g+n++ +s+++ +l++wykg +LLe id+ KIAA1038 261 GENLITRSQSS-------ELTKWYKG--------------LCLLEQIDS- 288 lPsPe<-* + +P+ KIAA1038 289 FKPPQ 293 PF03144.15.fs: domain 1 of 1, from 314 to 381: score 52.5, E = 1.2e-13 *->GtVatgRvesGtlkkGdeveigg.ngtkkyvpevtrVtslemfhg.l G+ +tg++e G + Gd++ +++n+t ++V+++ + +++ KIAA1038 314 GFCITGKIEAGYIQTGDRLLAMPpNET-------CTVKGITLHDEpV 353 deavaGdnaGlilagiglkdaaikrGdvla<-* d a aGd ++l+l g ++ i++G++++ KIAA1038 354 DWAAAGDHVSLTLVGMDIIK--INVGCIFC 381 PF03144.15.ls: domain 1 of 1, from 314 to 381: score 54.4, E = 3.5e-13 *->GtVatgRvesGtlkkGdeveigg.ngtkkyvpevtrVtslemfhg.l G+ +tg++e G + Gd++ +++n+t ++V+++ + +++ KIAA1038 314 GFCITGKIEAGYIQTGDRLLAMPpNET-------CTVKGITLHDEpV 353 deavaGdnaGlilagiglkdaaikrGdvla<-* d a aGd ++l+l g ++ i++G++++ KIAA1038 354 DWAAAGDHVSLTLVGMDIIK--INVGCIFC 381 PF03143.7.ls: domain 1 of 1, from 387 to 495: score 128.9, E = 1.3e-35 *->ikphtkFeAqVyiLnkeeqIggRhtPffdgYtpqfycrTtdvtgkid ik++t+F+A++ i+n e I+ ++ +++ t ++ +++++++++ KIAA1038 387 IKACTRFRARILIFNIEIPITKGFPVLLHYQTVSEPAVIKRLISVLN 433 kltgkvkkvleegpemVmpGDnvivtvelikPiavEtFsdYPpggRFAiR k tg+ v++++p+++ +G+n+ v+++ ++Pia+E ++d++++gRF++R KIAA1038 434 KSTGE---VTKKKPKFLTKGQNALVELQTQRPIALELYKDFKELGRFMLR 480 EGGrTVGaGvVteil<-* GG T++aGvVtei+ KIAA1038 481 YGGSTIAAGVVTEIK 495 PF03143.7.fs: domain 1 of 1, from 387 to 495: score 126.9, E = 5.2e-35 *->ikphtkFeAqVyiLnkeeqIggRhtPffdgYtpqfycrTtdvtgkid ik++t+F+A++ i+n e I+ ++ +++ t ++ +++++++++ KIAA1038 387 IKACTRFRARILIFNIEIPITKGFPVLLHYQTVSEPAVIKRLISVLN 433 kltgkvkkvleegpemVmpGDnvivtvelikPiavEtFsdYPpggRFAiR k tg+ v++++p+++ +G+n+ v+++ ++Pia+E ++d++++gRF++R KIAA1038 434 KSTGE---VTKKKPKFLTKGQNALVELQTQRPIALELYKDFKELGRFMLR 480 EGGrTVGaGvVteil<-* GG T++aGvVtei+ KIAA1038 481 YGGSTIAAGVVTEIK 495 //