hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-15212693/chunk_1/iprscan-20080501-15212693.nocrc
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Query sequence: KIAA1028
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 290.4    1.3e-82   1
SM00219                                                 -43.4    1.9e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1      20   332 ..     1   280 []   -43.4  1.9e-08
SM00220    1/1      20   334 ..     1   231 []   290.4  1.3e-82

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 20 to 332: score -43.4, E = 1.9e-08
                   *->ltlgkkLGeGaFGeVykGtlk.....ieVAVKtLkeda.keeFlrEa
                         g k G+G +G Vyk++ k+++++ e A K +      +  +rE+
    KIAA1028    20    EYEGCKVGRGTYGHVYKARRKdgkdeKEYALKQIEGTGiSMSACREI 66   

                   kiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldyLr
                    ++++l  kHpN+++L  v +++     ++  +++++ y+e+ dL + ++
    KIAA1028    67 ALLREL--KHPNVIALQKVFLSH-----SDRKVWLLFDYAEH-DLWHIIK 108  

                   knrpk........lslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLv
                    +r  + ++++ +l+ s   s  +QI +G  YL+ + + HRDL   N+Lv
    KIAA1028   109 FHRASkankkpmqLPRSMVKSLLYQILDGIHYLHANWVLHRDLKPANILV 158  

                   genk....vvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirW
                     +++++++vKI+D G +R   +          +  +   + + ++   W
    KIAA1028   159 MGEGpergRVKIADMGFARLFNSP--------LKPLA---DLDPVVVTFW 197  

                   m.APEsl.kdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneev
                   ++APE l   + +t + D+W+ G    E++t     +        +++  
    KIAA1028   198 YrAPELLlGARHYTKAIDIWAIGCIFAELLTSEPIFHCR-----QEDIKT 242  

                   leylkkGyRlpkPendlpiS..............................
                    +   +    ++      +  + +++ ++ ++ ++ ++ +++ ++++  +
    KIAA1028   243 SNPFHHDQLDRIFSV---MGfpadkdwedirkmpeyptlqkdfrrttyan 289  

                   .........s.vtCPdelYdlMlqCWaedPedRPtFselverl<-*
                   ++  +  ++ +v   ++++ l ++    dP +R t ++  ++    
    KIAA1028   290 sslikymekHkVKPDSKVFLLLQKLLTMDPTKRITSEQALQDP    332  

SM00220: domain 1 of 1, from 20 to 334: score 290.4, E = 1.3e-82
                   *->YellkklGkGaFGkVylardkk..tgrlvAiKvik.....erilrEi
                         + k+G+G++G Vy+ar k++++ +++A+K+i +++ + +++rEi
    KIAA1028    20    EYEGCKVGRGTYGHVYKARRKDgkDEKEYALKQIEgtgisMSACREI 66   

                   kiLkk.dHPNIVkLydvfed...dklylVmEyceGdlGdLfdllkkrgrr
                   ++L++ +HPN++ L  vf ++++ k++l ++y+e+   dL +++k ++  
    KIAA1028    67 ALLRElKHPNVIALQKVFLShsdRKVWLLFDYAEH---DLWHIIKFHRAS 113  

                   glr...kvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds...
                   + ++++ +l+ ++++++++Qil+++ YLH ++++HRDLKP+NiL+  +++
    KIAA1028   114 KANkkpMQLPRsMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGegp 163  

                   ...hvKlaDFGlArql..........ttfvGTpeYmAPEvl....gYgkp
                   ++++vK+aD G+Ar+++++ ++  + + +v+T +Y+APE+l + ++Y+k 
    KIAA1028   164 ergRVKIADMGFARLFnsplkpladlDPVVVTFWYRAPELLlgarHYTK- 212  

                   avDiWSlGcilyElltGkpPFp...............qldlifkkig...
                   a+DiW++Gci++Ellt +p F+ ++++ +++++ +++qld+if ++g + 
    KIAA1028   213 AIDIWAIGCIFAELLTSEPIFHcrqediktsnpfhhdQLDRIFSVMGfpa 262  

                   .........................................SpeakdLik
                   ++++++ ++ +++++  ++ +++++ +++  ++ ++++ ++++ +  L++
    KIAA1028   263 dkdwedirkmpeyptlqkdfrrttyansslikymekhkvkpDSKVFLLLQ 312  

                   klLvkdPekRlta.eaLedeldikaHPff<-*
                   klL++dP+kR+t ++aL+       +P+f   
    KIAA1028   313 KLLTMDPTKRITSeQALQ-------DPYF    334  

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