hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-15212693/chunk_1/iprscan-20080501-15212693.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1028 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00069.15.ls Protein kinase domain 255.2 1.3e-73 1 PF00069.15.fs Protein kinase domain 253.7 3.6e-73 1 PF07714.7.fs Protein tyrosine kinase 31.6 4.3e-09 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07714.7.fs 1/1 19 172 .. 1 156 [. 31.6 4.3e-09 PF00069.15.ls 1/1 19 334 .. 1 287 [] 255.2 1.3e-73 PF00069.15.fs 1/1 25 334 .. 6 287 .] 253.7 3.6e-73 Alignments of top-scoring domains: PF07714.7.fs: domain 1 of 1, from 19 to 172: score 31.6, E = 4.3e-09 *->lklg.kkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeei ++ + k G+G +G+Vyk++ k ++++e + A K + e g+ + KIAA1028 19 FEYEgCKVGRGTYGHVYKARRK--DGKDEKEYALKQI-E-GTGIS-- 59 eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd + rE++++++l +HpN++ L v + +++ +++ + y+e+ d KIAA1028 60 --MSACREIALLREL-KHPNVIALQKVFLSHSDRK---VWLLFDYAEH-D 102 LldfLrkhr......egrpLtlkdLlsfalQiAkGMeYLesknfvHRDLA L + + hr ++ ++ + +L+ ++ s +Qi +G YL+++ HRDL KIAA1028 103 LWHIIKFHRaskankKPMQLPRSMVKSLLYQILDGIHYLHANWVLHRDLK 152 ARNcLVs....enlvVKIsD<-* N+LV ++++e + VKI+D KIAA1028 153 PANILVMgegpERGRVKIAD 172 PF00069.15.ls: domain 1 of 1, from 19 to 334: score 255.2, E = 1.3e-73 *->yelle.klGsGsfGtVykakhkgtgk..iVAvKiikkrkekskkdkt +e ++ k+G+G++G Vyka++k+ +++++A+K+i+ +++++ ++ KIAA1028 19 FEYEGcKVGRGTYGHVYKARRKDGKDekEYALKQIEGTGISMSACR- 64 arrlsEiqilkrLsHpNIvrlidvfed..kdhlylVlEycegGLrvldLf Ei++l++L+HpN++ l vf ++++++++l ++y+e+ dL+ KIAA1028 65 -----EIALLRELKHPNVIALQKVFLShsDRKVWLLFDYAEH-----DLW 104 dyls..e..trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPe ++++ ++ + +k+p+ ++ +k+ ++Qil g+ YLH+n+++HRDLKP+ KIAA1028 105 HIIKfhRasKANKKPMQLPRSMVKSLLYQILDGIHYLHANWVLHRDLKPA 154 NILldnngvvdaflKiaDFGlAkkls..t.sss.lttfvGTpwYmAPEvl NIL+ +g ++KiaD G+A+++++++++ +l+ +v+T wY+APE+l KIAA1028 155 NILVMGEGPERGRVKIADMGFARLFNspLkPLAdLDPVVVTFWYRAPELL 204 lggngygtkvDvWSlGvilyelltGk.............pPFsgevqdsl lg+++y++++D+W++G+i++ellt ++ + ++++ +++ PF ++ KIAA1028 205 LGARHYTKAIDIWAIGCIFAELLTSEpifhcrqediktsNPFHHD----- 249 dqlqlirkilgpplefdspewdsisrse.fr.................r. ql +i+ ++g p + d++ + ++ +++++++ ++++ +++ + ++ KIAA1028 250 -QLDRIFSVMGFPADKDWEDIRKMPEYPtLQkdfrrttyansslikymEk 298 l.pnlseeakdLikkcLnkDPskRltaeeilqHPwf<-* +++ ++ L+ k+L++DP+kR+t e++lq+P+f KIAA1028 299 HkVKPDSKVFLLLQKLLTMDPTKRITSEQALQDPYF 334 PF00069.15.fs: domain 1 of 1, from 25 to 334: score 253.7, E = 3.6e-73 *->klGsGsfGtVykakhkgtgk..iVAvKiikkrkekskkdktarrlsE k+G+G++G Vyka++k+ +++++A+K+i+ +++++ ++ E KIAA1028 25 KVGRGTYGHVYKARRKDGKDekEYALKQIEGTGISMSACR------E 65 iqilkrLsHpNIvrlidvfed..kdhlylVlEycegGLrvldLfdyls.. i++l++L+HpN++ l vf ++++++++l ++y+e+ dL+++++ + KIAA1028 66 IALLRELKHPNVIALQKVFLShsDRKVWLLFDYAEH-----DLWHIIKfh 110 e..trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldn + + +k+p+ ++ +k+ ++Qil g+ YLH+n+++HRDLKP+NIL+ KIAA1028 111 RasKANKKPMQLPRSMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMG 160 ngvvdaflKiaDFGlAkkls..t.sss.lttfvGTpwYmAPEvllggngy +g ++KiaD G+A+++++++++ +l+ +v+T wY+APE+llg+++y KIAA1028 161 EGPERGRVKIADMGFARLFNspLkPLAdLDPVVVTFWYRAPELLLGARHY 210 gtkvDvWSlGvilyelltGk.............pPFsgevqdsldqlqli ++++D+W++G+i++ellt ++ + ++++ +++ PF ++ ql +i KIAA1028 211 TKAIDIWAIGCIFAELLTSEpifhcrqediktsNPFHHD------QLDRI 254 rkilgpplefdspewdsisrse.fr.................r.l.pnls + ++g p + d++ + ++ +++++++ ++++ +++ + ++ +++ + KIAA1028 255 FSVMGFPADKDWEDIRKMPEYPtLQkdfrrttyansslikymEkHkVKPD 304 eeakdLikkcLnkDPskRltaeeilqHPwf<-* + L+ k+L++DP+kR+t e++lq+P+f KIAA1028 305 SKVFLLLQKLLTMDPTKRITSEQALQDPYF 334 //