hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-15040809/chunk_1/iprscan-20080501-15040809.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1018
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08774.1.ls VRR-NUC domain                                 140.5    4.1e-39   1
PF08774.1.fs VRR-NUC domain                                 138.6    1.6e-38   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF08774.1.fs   1/1     916  1031 ..     1   117 []   138.6  1.6e-38
PF08774.1.ls   1/1     916  1031 ..     1   117 []   140.5  4.1e-39

Alignments of top-scoring domains:
PF08774.1.fs: domain 1 of 1, from 916 to 1031: score 138.6, E = 1.6e-38
                   *->lregdievalvdalklkhgpilglpvknwgkls.eelLeealaclgg
                       +e++++++   +++++ g   ++  + w++++++++ ++++ clgg
    KIAA1018   916    APEESLRAWVAATWHEQEG--RVASLVSWDRFTsLQQAQDLVSCLGG 960  

                   ealaklfrrllqDyrkglrsGvPDLilwrpegk.flfvEVKgPgdrlsde
                   ++l++++r+l++D+r ++r+G PDL++w+ ++++f++vEVKgP+drls +
    KIAA1018   961 PVLSGVCRHLAADFR-HCRGGLPDLVVWNSQSRhFKLVEVKGPNDRLSHK 1009 

                   QkawldrlarsGfkveVcrvve<-*
                   Q++wl+ l+++G++veVc+vv+   
    KIAA1018  1010 QMIWLAELQKLGAEVEVCHVVA    1031 

PF08774.1.ls: domain 1 of 1, from 916 to 1031: score 140.5, E = 4.1e-39
                   *->lregdievalvdalklkhgpilglpvknwgkls.eelLeealaclgg
                       +e++++++   +++++ g   ++  + w++++++++ ++++ clgg
    KIAA1018   916    APEESLRAWVAATWHEQEG--RVASLVSWDRFTsLQQAQDLVSCLGG 960  

                   ealaklfrrllqDyrkglrsGvPDLilwrpegk.flfvEVKgPgdrlsde
                   ++l++++r+l++D+r ++r+G PDL++w+ ++++f++vEVKgP+drls +
    KIAA1018   961 PVLSGVCRHLAADFR-HCRGGLPDLVVWNSQSRhFKLVEVKGPNDRLSHK 1009 

                   QkawldrlarsGfkveVcrvve<-*
                   Q++wl+ l+++G++veVc+vv+   
    KIAA1018  1010 QMIWLAELQKLGAEVEVCHVVA    1031 

//