hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-15004205/chunk_1/iprscan-20080501-15004205.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1016 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00560.23.ls Leucine Rich Repeat 67.0 5.7e-17 8 PF00307.21.ls Calponin homology (CH) domain 63.6 6e-16 1 PF00307.21.fs Calponin homology (CH) domain 61.7 7.1e-16 1 PF00560.23.fs Leucine Rich Repeat 55.4 4.1e-14 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00560.23.ls 2/8 186 207 .. 1 24 [] 14.6 0.34 PF00560.23.fs 1/6 186 207 .. 1 24 [] 12.7 0.02 PF00560.23.fs 2/6 209 230 .. 1 24 [] 10.9 0.063 PF00560.23.ls 3/8 209 230 .. 1 24 [] 12.8 1.1 PF00560.23.ls 4/8 231 252 .. 1 24 [] 9.7 4 PF00560.23.ls 5/8 254 275 .. 1 24 [] 10.4 3 PF00560.23.fs 5/6 277 298 .. 1 24 [] 11.2 0.053 PF00560.23.ls 6/8 277 298 .. 1 24 [] 13.0 0.96 PF00307.21.fs 1/1 642 757 .. 1 122 [] 61.7 7.1e-16 PF00307.21.ls 1/1 642 757 .. 1 122 [] 63.6 6e-16 Alignments of top-scoring domains: PF00560.23.ls: domain 2 of 8, from 186 to 207: score 14.6, E = 0.34 *->nLeeLdLsgCNpsltgslpssl.nl<-* +Le+L+L++ N + + +p+ + nl KIAA1016 186 SLEILNLYH-N-CI-RVIPEAIvNL 207 PF00560.23.fs: domain 1 of 6, from 186 to 207: score 12.7, E = 0.02 *->nLeeLdLsgCNpsltgslpssl.nl<-* +Le+L+L++ N + + +p+ + nl KIAA1016 186 SLEILNLYH-N-CI-RVIPEAIvNL 207 PF00560.23.fs: domain 2 of 6, from 209 to 230: score 10.9, E = 0.063 *->nLeeLdLsgCNpsltgslpssl.nl<-* L++L+Ls+ N +l+ lp+ l +l KIAA1016 209 MLTYLNLSR-N-QLS-ALPACLcGL 230 PF00560.23.ls: domain 3 of 8, from 209 to 230: score 12.8, E = 1.1 *->nLeeLdLsgCNpsltgslpssl.nl<-* L++L+Ls+ N +l+ lp+ l +l KIAA1016 209 MLTYLNLSR-N-QLS-ALPACLcGL 230 PF00560.23.ls: domain 4 of 8, from 231 to 252: score 9.7, E = 4 *->nLeeLdLsgCNpsltgslpssl.nl<-* L++L s+ N +l gslp++++ l KIAA1016 231 PLKVLIASN-N-KL-GSLPEEIgQL 252 PF00560.23.ls: domain 5 of 8, from 254 to 275: score 10.4, E = 3 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L eLd+s+ N +t lp ++ l KIAA1016 254 QLMELDVSC-N-EIT-ALPQQIgQL 275 PF00560.23.fs: domain 5 of 6, from 277 to 298: score 11.2, E = 0.053 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L+eL++++ N l + lp +l +l KIAA1016 277 SLRELNVRR-N-YL-KVLPQELvDL 298 PF00560.23.ls: domain 6 of 8, from 277 to 298: score 13.0, E = 0.96 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L+eL++++ N l + lp +l +l KIAA1016 277 SLRELNVRR-N-YL-KVLPQELvDL 298 PF00307.21.fs: domain 1 of 1, from 642 to 757: score 61.7, E = 7.1e-16 *->sqekellrWvnsvlagypgnkdtlPippvritnfftdwlkDGlaLca ++ekel++ +++ ++ + + v+ ++ l+DG++Lc+ KIAA1016 642 REEKELVEQLRESIEMRLK---------VSLHEDLGAALMDGVVLCH 679 LlnklrPglidkkkv.....pslsrfdkleNlnlaldaaekeGlgiilvl L+n++rP+++ ++v+++ p+ls +++ N++++l+a++k G+++ +l KIAA1016 680 LVNHIRPRSVASIHVpspavPKLSMAKCRRNVENFLEACRKLGVPE-ADL 728 idpeDive...gnpdPDeklvltllwqLirrfq<-* p Di + + + ++++ +l +L +++ KIAA1016 729 CSPCDILQldfRHI----RKTVDTLLALGEKAP 757 PF00307.21.ls: domain 1 of 1, from 642 to 757: score 63.6, E = 6e-16 *->sqekellrWvnsvlagypgnkdtlPippvritnfftdwlkDGlaLca ++ekel++ +++ ++ + + v+ ++ l+DG++Lc+ KIAA1016 642 REEKELVEQLRESIEMRLK---------VSLHEDLGAALMDGVVLCH 679 LlnklrPglidkkkv.....pslsrfdkleNlnlaldaaekeGlgiilvl L+n++rP+++ ++v+++ p+ls +++ N++++l+a++k G+++ +l KIAA1016 680 LVNHIRPRSVASIHVpspavPKLSMAKCRRNVENFLEACRKLGVPE-ADL 728 idpeDive...gnpdPDeklvltllwqLirrfq<-* p Di + + + ++++ +l +L +++ KIAA1016 729 CSPCDILQldfRHI----RKTVDTLLALGEKAP 757 //